Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1284 118 1e-21
seq1474 95.1 1e-14
>seq1284
Length=15898
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| |||| || | ||| |||||| || || ||||| || | ||| || || ||
Sbjct 6264 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 6205
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || ||||| || || ||||||||||||| || | || |||||||
Sbjct 6204 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 6145
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || |||| | | | |||||| ||| ||||| || | |||||
Sbjct 6144 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 6085
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| |||||||| || ||||| || ||||| |||||
Sbjct 6084 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 6050
>seq1474
Length=13610
Score = 95.1 bits (104), Expect = 1e-14
Identities = 126/170 (74%), Gaps = 4/170 (2%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || |||||||| | || || || |||| || |||||||| ||||||||
Sbjct 6990 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 7049
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
||||| ||||||||||||| || | | |||||||||| ||| | || | |||| ||
Sbjct 7050 AATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 7107
Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159
| | | | || ||| || || || |||| |||||||| ||||| ||
Sbjct 7108 TTGTCGATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 7157
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| || | ||||| || |||||| ||||| ||||| || | || ||| || |
Sbjct 6452 ACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGTGCGACC 6511
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||| || ||||| || | ||||||||||||| || | | ||||||
Sbjct 6512 ATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTT 6571
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|| | || | || | | | ||| | | | ||||| ||||| || |||| ||| |
Sbjct 6572 GT-CTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAA 6630
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || ||||| || || || || || || || |||||
Sbjct 6631 TCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667
Score = 82.4 bits (90), Expect = 9e-11
Identities = 160/234 (68%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
||||| || || | | ||| | || | ||||| || |||||| || || || ||
Sbjct 6207 TATTGGCCGCCACGAAGACGGAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAG 6266
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|| ||| || || |||| || | |||||| |||||||| || || ||||||||||||
Sbjct 6267 TCGCTCAGGGTACGACCGTCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCG 6326
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGA 43129
| || | | |||||| ||| ||| | || | || | | | | |||||| ||
Sbjct 6327 GGAGGAATACCCTCCTTATCC-TGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGA 6385
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || | ||| || || ||||| || | |||||| || ||||| |||||
Sbjct 6386 CTCGACTTCCAACGTAATCGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571798915859920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |