Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1284 131 1e-25 seq1474 113 3e-20 >seq1284 Length=15898 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||||||| | || || ||||| ||||||||||||||| Sbjct 6276 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6217 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || ||||| || || |||||||||||| ||| Sbjct 6216 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 6157 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | |||| ||| || || Sbjct 6156 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 6097 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 6096 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 6050 >seq1474 Length=13610 Score = 113 bits (124), Expect = 3e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| || ||||| |||||||| ||||| || ||| |||| Sbjct 6970 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCC 7029 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||||||||| |||||||||||| ||| | | ||||||||| Sbjct 7030 TCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 7089 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||||| || ||||| || | |||||||| Sbjct 7090 TGAATCTTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTC 7149 Query 34358 TTGCCGGTGA 34367 |||||||||| Sbjct 7150 TTGCCGGTGA 7159 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || |||| ||| | ||| || ||||| |||||||||||||| Sbjct 6669 CCACCGCGAAGACGAAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 6728 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||||| || || || | ||||||||||| ||| Sbjct 6729 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 6788 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | || | | || | ||| | || ||||| Sbjct 6789 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACC 6848 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || | |||||||| ||||| ||||| || || || Sbjct 6849 TCGAGAGTGATGGTCTTGCCAGTGAGCGTCTTGAC 6883 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| |||||| ||| ||| |||| ||||||||||| || ||||| Sbjct 6249 TCCTTCTGGATGTTATAGTCGCTCAGGGTACGACCGTCTTCCAACTGCTTTCCAGCGAAG 6308 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||||||| || | | |||||| || ||||| ||| | | Sbjct 6309 ATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGAATCTTGGACTTCACGTTA 6368 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || ||||| |||| ||| || || ||||| || | || || || Sbjct 6369 TCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTGCCAGTCAACGTCTTGACG 6428 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 6429 AAGATCTGCAT 6439 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || || || | || || ||||| ||||||||||| ||| Sbjct 6441 CCACCACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGAC 6500 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || || | |||||| || ||||| || | |||||||||||| || Sbjct 6501 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 6560 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | || | ||||| || Sbjct 6561 ATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACC 6620 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| || || ||||| || |||||||| || || |||||||| Sbjct 6621 TCGAGCGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323061707531840