Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq719 109 1e-18
seq1698 104 5e-17
>seq719
Length=48969
Score = 109 bits (120), Expect = 1e-18
Identities = 407/626 (65%), Gaps = 19/626 (3%)
Strand=Plus/Minus
Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850
|| |||| ||||| | || || | ||| | | ||| | ||||| || |||||| |
Sbjct 17602 GCCATTGTCTACGACCGCGACTTCAACTACCAATACTTCGGCTTCAAGACCTTGGAGAGA 17543
Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910
|| || || || || |||| |||||||| | || || |||||||||| | |||||
Sbjct 17542 TCATACCTGCTTAAGCTTGACGGCAAGATTGCCGAGAGACCTCAGCACATGATCATGCGT 17483
Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970
|| || ||||| || ||| || | ||| | || ||||||| |||| | |||
Sbjct 17482 GTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGTGTCATCGAGACCTACAACCTCATG 17423
Query 248971 ---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027
|| | || | || || ||| | || || ||||||||||| |||||| | |
Sbjct 17422 TCCAGCAAGTTCT---TCACCCACGCCTCCCCCACACTCTTCAACGCTGGTACC--CCTC 17368
Query 249028 AAT--CAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTT 249085
| | |||||| || ||||| || | | |||| | || |||||| | || || ||||
Sbjct 17367 AGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATTT 17308
Query 249086 ATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCC 249144
| ||||| || || || | || | ||| || || | || || || || |||||| |
Sbjct 17307 ACGACACCCTCAAGACCTGC-GCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAAC 17249
Query 249145 GTCTC-CAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG-ATG 249202
| ||| | ||||| || | || || ||||| || || || || || | | |
Sbjct 17248 G-CTCACCGTATCCGTGCTACTGGCTCCTACATTGCCGGCACCAA-CGGTACATCGAACG 17191
Query 249203 GTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGC 249262
|| || | ||| | ||||| ||| | ||| || | | | || |||||| ||
Sbjct 17190 GTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCA 17131
Query 249263 GC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGT 249319
| || || | |||||||| || | || |||||||||||| | || ||||
Sbjct 17130 ACAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGT 17071
Query 249320 TCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACG 249379
|| |||||||| |||||| ||||||| ||| | | || || || || ||| ||
Sbjct 17070 TCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCTCGCGATCTTTTCCTCG 17011
Query 249380 GCCTGTGGGTCTCCGACTTGTTCATG 249405
|| ||| || |||| ||||||||
Sbjct 17010 CTCTCTGGATCCCCGATCTGTTCATG 16985
>seq1698
Length=21942
Score = 104 bits (114), Expect = 5e-17
Identities = 258/389 (66%), Gaps = 22/389 (6%)
Strand=Plus/Minus
Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070
|||| ||| ||||||| || || ||||| ||||| || || | | || ||||| |
Sbjct 17129 TGCTGTTCTACGGTCCCCCAGGCACAGGAAAGACCTCTACAGTATTAGCTTTGGCCAAAG 17070
Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130
|| | || | || || | | ||||||||||||||| |||||||||||||| |
Sbjct 17069 AACTCTACGGTCCCGAGATGATCAAATCGCGCGTGCTCGAGCTTAACGCTTCTGACGAGC 17010
Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAG-ACTTT-CTC-CA---AGATGTCGATTT 254184
| || | | |||| || || || | ||| ||||| ||| || || || |||
Sbjct 17009 GTGGAATCTCCATCGTTCGAGAGAAAGTGAAGGACTTTGCTCGCATGCAGTTGACGAACC 16950
Query 254185 CGTCGTTCCAA--------------CCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGA 254230
|| || | || ||| ||| ||||| |||||| | | ||| ||||
Sbjct 16949 CGACGAACGAATATAAGAAGAGATACCC--CTGCCCGCCATTCAAGATTATCATCTTGGA 16892
Query 254231 CGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCA 254290
|||||| ||| | ||||| ||||| ||| ||| | ||||| || |||||||| |
Sbjct 16891 CGAGGCCGACTCTATGACCCAAGACGCACAGAGTGCCTTGCGCCGCACCATGGAGACATA 16832
Query 254291 CTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCT 254350
| | | ||||| ||||||||| | ||||||||||| || ||||||| || ||
Sbjct 16831 CAGCAAAATCACGCGGTTTTGCCTGATTTGCAACTACGTCACGCGAATCATCGATCCCCT 16772
Query 254351 GGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379
||| ||| || |||||| || ||||
Sbjct 16771 TGCTAGTCGTTGTAGCAAGTTCCGCTTCA 16743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073730437549952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |