Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq719 109 1e-18 seq1698 104 5e-17 >seq719 Length=48969 Score = 109 bits (120), Expect = 1e-18 Identities = 407/626 (65%), Gaps = 19/626 (3%) Strand=Plus/Minus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || |||| ||||| | || || | ||| | | ||| | ||||| || |||||| | Sbjct 17602 GCCATTGTCTACGACCGCGACTTCAACTACCAATACTTCGGCTTCAAGACCTTGGAGAGA 17543 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 || || || || || |||| |||||||| | || || |||||||||| | ||||| Sbjct 17542 TCATACCTGCTTAAGCTTGACGGCAAGATTGCCGAGAGACCTCAGCACATGATCATGCGT 17483 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970 || || ||||| || ||| || | ||| | || ||||||| |||| | ||| Sbjct 17482 GTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGTGTCATCGAGACCTACAACCTCATG 17423 Query 248971 ---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027 || | || | || || ||| | || || ||||||||||| |||||| | | Sbjct 17422 TCCAGCAAGTTCT---TCACCCACGCCTCCCCCACACTCTTCAACGCTGGTACC--CCTC 17368 Query 249028 AAT--CAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTT 249085 | | |||||| || ||||| || | | |||| | || |||||| | || || |||| Sbjct 17367 AGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATTT 17308 Query 249086 ATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCC 249144 | ||||| || || || | || | ||| || || | || || || || |||||| | Sbjct 17307 ACGACACCCTCAAGACCTGC-GCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAAC 17249 Query 249145 GTCTC-CAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG-ATG 249202 | ||| | ||||| || | || || ||||| || || || || || | | | Sbjct 17248 G-CTCACCGTATCCGTGCTACTGGCTCCTACATTGCCGGCACCAA-CGGTACATCGAACG 17191 Query 249203 GTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGC 249262 || || | ||| | ||||| ||| | ||| || | | | || |||||| || Sbjct 17190 GTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCA 17131 Query 249263 GC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGT 249319 | || || | |||||||| || | || |||||||||||| | || |||| Sbjct 17130 ACAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGT 17071 Query 249320 TCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACG 249379 || |||||||| |||||| ||||||| ||| | | || || || || ||| || Sbjct 17070 TCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCTCGCGATCTTTTCCTCG 17011 Query 249380 GCCTGTGGGTCTCCGACTTGTTCATG 249405 || ||| || |||| |||||||| Sbjct 17010 CTCTCTGGATCCCCGATCTGTTCATG 16985 >seq1698 Length=21942 Score = 104 bits (114), Expect = 5e-17 Identities = 258/389 (66%), Gaps = 22/389 (6%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| ||||||| || || ||||| ||||| || || | | || ||||| | Sbjct 17129 TGCTGTTCTACGGTCCCCCAGGCACAGGAAAGACCTCTACAGTATTAGCTTTGGCCAAAG 17070 Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130 || | || | || || | | ||||||||||||||| |||||||||||||| | Sbjct 17069 AACTCTACGGTCCCGAGATGATCAAATCGCGCGTGCTCGAGCTTAACGCTTCTGACGAGC 17010 Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAG-ACTTT-CTC-CA---AGATGTCGATTT 254184 | || | | |||| || || || | ||| ||||| ||| || || || ||| Sbjct 17009 GTGGAATCTCCATCGTTCGAGAGAAAGTGAAGGACTTTGCTCGCATGCAGTTGACGAACC 16950 Query 254185 CGTCGTTCCAA--------------CCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGA 254230 || || | || ||| ||| ||||| |||||| | | ||| |||| Sbjct 16949 CGACGAACGAATATAAGAAGAGATACCC--CTGCCCGCCATTCAAGATTATCATCTTGGA 16892 Query 254231 CGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCA 254290 |||||| ||| | ||||| ||||| ||| ||| | ||||| || |||||||| | Sbjct 16891 CGAGGCCGACTCTATGACCCAAGACGCACAGAGTGCCTTGCGCCGCACCATGGAGACATA 16832 Query 254291 CTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCT 254350 | | | ||||| ||||||||| | ||||||||||| || ||||||| || || Sbjct 16831 CAGCAAAATCACGCGGTTTTGCCTGATTTGCAACTACGTCACGCGAATCATCGATCCCCT 16772 Query 254351 GGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||| ||| || |||||| || |||| Sbjct 16771 TGCTAGTCGTTGTAGCAAGTTCCGCTTCA 16743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073730437549952