Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1284 136 3e-27
seq1474 118 8e-22
>seq1284
Length=15898
Score = 136 bits (150), Expect = 3e-27
Identities = 161/217 (74%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||| |||||||||||| ||| ||| |||| ||
Sbjct 6258 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 6199
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| |||| ||||| |||||||| || | ||||||||||||
Sbjct 6198 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 6139
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| ||||||||| | ||| || ||||||
Sbjct 6138 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 6079
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343
|||||||| ||||| || ||||| |||||| ||||||
Sbjct 6078 CCCGTCAGGGTCTTGACGAAGATCTGCATGATTGCCT 6042
>seq1474
Length=13610
Score = 118 bits (130), Expect = 8e-22
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
||||| || ||||||||||||||||||||| || |||| | || || || ||
Sbjct 6465 TGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGTGCGACCATCCTCAAGCTGC 6524
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
||||||||||| ||||| ||||| ||||||||||| | |||||||||||| || ||
Sbjct 6525 TTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCTTGGATCTTC 6584
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
|||||| | | | |||| | || ||||| | |||||||||||||| ||
Sbjct 6585 GACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCAGTA 6644
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
||||| || || || || |||||
Sbjct 6645 AGAGTTTTGACGAAAATCTGCAT 6667
Score = 109 bits (120), Expect = 4e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
||||| || ||||||||| ||||| |||||| |||| ||| |||| |||| ||
Sbjct 6237 TGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTACGACCGTCTTCCAACTGC 6296
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
||||| ||||| || | ||||| ||||||||||| | ||||||||| ||| ||| ||
Sbjct 6297 TTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGAATCTTG 6356
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | |||| ||| || |||| |||||||||||||| |||
Sbjct 6357 GACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTGCCAGTC 6416
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
| ||||| || ||||| |||||
Sbjct 6417 AACGTCTTGACGAAGATCTGCAT 6439
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||||||||||||||||| || ||| |||| ||
Sbjct 6687 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 6746
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
||||| || || || || ||||| ||||| ||||| || || | |||||||| ||| |
Sbjct 6747 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGA 6806
Query 45248 ATTTT 45252
|| ||
Sbjct 6807 ATCTT 6811
Score = 82.4 bits (90), Expect = 6e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||| ||| || ||| |||| ||
Sbjct 6973 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCA 7032
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| || | ||||| |||||||| || | ||||||||||||| |
Sbjct 7033 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGA 7092
Query 45248 ATTTT 45252
|| ||
Sbjct 7093 ATCTT 7097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395062613644894
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |