Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq719 322 4e-83
seq1284 111 1e-19
seq1474 107 2e-18
seq1802 91.5 1e-13
>seq719
Length=48969
Score = 322 bits (356), Expect = 4e-83
Identities = 1196/1854 (65%), Gaps = 50/1854 (3%)
Strand=Plus/Plus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
|| || || || |||||||||||||| ||||| | |||||| || || || ||
Sbjct 15777 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATGCTG 15836
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || |||| | ||||| | |||| ||||| ||| |||||
Sbjct 15837 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATG 15896
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324
|| || || || ||||| ||||| | | | || ||| || || |||||||| |||
Sbjct 15897 AAGGCACCACGGTCGGCAGCCATCTGGACAACCGTGCGCTGGGAGATCTCCCATACAGTC 15956
Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATT 22383
||||||| | ||| ||| | ||| | | | | || |||| | || ||||| |
Sbjct 15957 TTGTACAAAGCCTTGACCTC-AGCGGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTC 16015
Query 22384 GTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGAC 22443
| ||||| || || || | |||| ||||| || ||| || | ||| || |
Sbjct 16016 GGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAG 16075
Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGG 22502
|| |||| || || || |||||||||| ||||| | || || ||||| |||||||
Sbjct 16076 CAACCAGGGGTTGACAACCTGGAACTCGCCGG-CAAGAACACGACGCTGGTAGATGTTGG 16134
Query 22503 ATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCA 22562
| ||| | || ||||| | || ||||| |||| ||||| | || || || || ||||
Sbjct 16135 AGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCA 16194
Query 22563 TCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCAT 22620
| || || | || | ||| | || ||||||| |||| | | || ||| ||
Sbjct 16195 TGGGGGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAAT 16254
Query 22621 CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACG 22678
| ||||||||| ||||| || ||| | ||||| |||||| ||||| || | | ||
Sbjct 16255 C--CCAGTCCCAAAGATCAGAGGGCTTGACATT---CCACATGTCGTACTGAAGGATACC 16309
Query 22679 CCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTT-- 22736
| | || ||| ||| |||||||| ||| | || | | ||| || |
Sbjct 16310 CTGGGAGATA--GGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGA 16367
Query 22737 -CGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG 22795
|| | | | | | || ||| || || ||||| ||||| |||||||| | ||
Sbjct 16368 ACGGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCA 16424
Query 22796 GCGGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACC 22851
||| || ||| ||| | ||||| || | | ||| || || || | |||
Sbjct 16425 CGGGCCTCAGGAGAC----TCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACC 16480
Query 22852 CTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCA 22907
||| || || | ||| || || |||| || || || |||| |||||| |
Sbjct 16481 CTGGACACCAAGACCAATGGGGCGGTGACGCATGTTG----CTATTGCGAGCCTCGGGAA 16536
Query 22908 AAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNN 22967
|| || || ||| || | |||||||||| | || | | || |
Sbjct 16537 CGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCT 16596
Query 22968 NNNNNNNNNNNTCAAAGTCGTAAACGCC--CGATTGTA--CAACAAACTTGTTGACGGCG 23023
| ||||| || || || || ||||| |||| || || | |||
Sbjct 16597 CGTGAAGCTTCTGGAAGTCATAGACACCATCG-TTGTAGTCAACGAAGGTGGGCAGGGCA 16655
Query 23024 ATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA-CGT-GTACTCTACAATTTCGG 23081
| || || | ||||| || || ||||| || ||| || |||||| | || || |
Sbjct 16656 AGGGAAGCCAAGTTGCAGACAGCGACCTCATCG--GGAGCGCAGTACTCAATGATCTCAG 16713
Query 23082 TACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACG 23141
| || || ||| | || || |||| || |||||||||| || || ||| |
Sbjct 16714 TGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGG 16773
Query 23142 AATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCC 23201
|||||||||||||||| | || |||| |||||| ||| | ||| | ||| || ||
Sbjct 16774 CATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACC 16833
Query 23202 ACATAGTCTGAGCGTGAACACGTCGCACGTACC-TGCCTTCTTCCTCGTACTTTTGGTAC 23260
| | |||| || | | | ||| || || |||| || |||||||| | ||||
Sbjct 16834 AAAGCTTCTGGGCCTTGATA-GTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTAC 16892
Query 23261 AACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320
|| || || || || | ||||| ||||| |||| ||| || | | | || ||||||
Sbjct 16893 AAGGCCTCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATG 16952
Query 23321 AGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380
|| |||| | || || || || | |||| || ||||| || ||||| ||||||
Sbjct 16953 AGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCG 17012
Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440
||| || ||||| || || |||||||| |||||| |||||| ||| |||| ||
Sbjct 17013 AGGAAAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAAC 17072
Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500
|| || || || || ||||| ||||| ||||||| ||| || || || || | ||| |||
Sbjct 17073 TCGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTG 17132
Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560
|| ||||| |||||||| || || ||||||||| | || | ||||| || | || ||||
Sbjct 17133 CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCG 17192
Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620
|| || | ||| ||| || | || || | || || | |||| ||| |
Sbjct 17193 TTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTG 17252
Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680
| ||| ||||| || || || || ||||| ||||| || || |||||||| ||
Sbjct 17253 AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATA 17312
Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG-GG 23739
||||| || ||| || || | |||| | ||| || ||||||| || || || ||
Sbjct 17313 CCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGG 17371
Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATT 23799
||| | || ||| ||||| ||| |||||| || ||| | | ||||| || ||
Sbjct 17372 GGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTT 17431
Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859
||| || |||||| | || | || || || || |||| || || ||||| ||
Sbjct 17432 GTAGGTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCATGAT 17491
Query 23860 CATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919
||||| |||||||||||| | | ||||| || || | ||| ||||| | | ||
Sbjct 17492 CATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAGGTATGATCTCTCCAA 17551
Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| || || || || || | ||||| ||||| || |||| || ||||| ||
Sbjct 17552 GGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGA 17605
>seq1284
Length=15898
Score = 111 bits (122), Expect = 1e-19
Identities = 165/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| ||||| ||||| || |||||| | || || ||
Sbjct 6045 CAATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGT 6104
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
||||||||| |||| | ||||| | || ||||||||| ||| | || ||||
Sbjct 6105 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 6164
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || ||||| || || ||| | || ||| || || ||| |
Sbjct 6165 ACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACT 6224
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || || || || || || || ||||| || | ||| | || ||||
Sbjct 6225 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTA 6278
>seq1474
Length=13610
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| ||||| ||||| || | || || || | ||
Sbjct 6439 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACGATTACGTTGGAAGTCGAGTCATCT 6380
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||| ||||| || | || |||||||||
Sbjct 6379 GACACGATTGATAACGTGAAGTCCAAGATTCAGGATAAGGAGGGTATTCCTCCCGACCAG 6320
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || |||||||||||| | || ||||||| ||||||
Sbjct 6319 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGACGGTCGTACCCTGAGCGACTATAAC 6260
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || || || || ||||| || ||
Sbjct 6259 ATCCAGAAGGAGTCAACCCTGCATCTCGTCCT 6228
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| || ||||| || ||||| ||||| || |||| |||||| | ||
Sbjct 6667 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 6608
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || || || |||||||| || | || |||||||||
Sbjct 6607 GACACCATTGACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCAG 6548
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || ||||| || || ||| | || || | ||| || || || |||
Sbjct 6547 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGACTACAAC 6488
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || || || || ||||| || || | ||| | || ||||
Sbjct 6487 ATTCAGAAGGAGTCAACCCTGCATCTCGTCCTGCGTCTGCGTGGTGGTA 6439
Score = 82.4 bits (90), Expect = 7e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| ||||| || |||||| |||| || || | ||||| | |||| | |||||
Sbjct 7157 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGATACCATCGACAACGTCAAGTCC 7098
Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336
| || ||||||||| || | || ||||||||||||||||| || |||||||||||
Sbjct 7097 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCTGGCAAG 7038
Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396
||| | || ||| || | |||||| ||||| || || || || || |||||
Sbjct 7037 CAGCTTGAGGACGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCTACCCTTCAC 6978
Query 31397 CTGGTACT 31404
|||| ||
Sbjct 6977 TTGGTTCT 6970
>seq1802
Length=45256
Score = 91.5 bits (100), Expect = 1e-13
Identities = 201/300 (67%), Gaps = 5/300 (2%)
Strand=Plus/Minus
Query 57563 TCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622
|||||| | ||| | |||||||| ||||| || || || || ||||||| ||| || |
Sbjct 29951 TCCAGA--TCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGAT 29894
Query 57623 AGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTT 57679
|| || || |||||||| ||| ||| | | |||| || ||||| | ||
Sbjct 29893 TGATCTCTCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTT 29834
Query 57680 TATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739
|| ||| | | || || |||||||| || |||||||| || |||||||| | ||
Sbjct 29833 CATCTCTCACATTCTTGCCTTCTTCGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGT 29774
Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799
|| | || || || || || || | ||||| | ||||| ||||| || || |
Sbjct 29773 TGAGCGCTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGAT 29714
Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|| || ||| | || || || | || || || ||||||||||| ||| | |||||
Sbjct 29713 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGA 29654
Score = 82.4 bits (90), Expect = 7e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 58020 TTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079
||||| | || || ||| | ||||| || || || |||||||| ||||| || ||||
Sbjct 29236 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAAC 29177
Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139
||| | || || || || ||||| || || || || ||||| ||||| |||||||||||
Sbjct 29176 GAGCTCATCTCCCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGTACTCTCAC 29117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445751834582880
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