Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq719 322 4e-83 seq1284 111 1e-19 seq1474 107 2e-18 seq1802 91.5 1e-13 >seq719 Length=48969 Score = 322 bits (356), Expect = 4e-83 Identities = 1196/1854 (65%), Gaps = 50/1854 (3%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || || || |||||||||||||| ||||| | |||||| || || || || Sbjct 15777 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATGCTG 15836 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || |||| | ||||| | |||| ||||| ||| ||||| Sbjct 15837 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATG 15896 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || || ||||| ||||| | | | || ||| || || |||||||| ||| Sbjct 15897 AAGGCACCACGGTCGGCAGCCATCTGGACAACCGTGCGCTGGGAGATCTCCCATACAGTC 15956 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATT 22383 ||||||| | ||| ||| | ||| | | | | || |||| | || ||||| | Sbjct 15957 TTGTACAAAGCCTTGACCTC-AGCGGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTC 16015 Query 22384 GTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGAC 22443 | ||||| || || || | |||| ||||| || ||| || | ||| || | Sbjct 16016 GGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAG 16075 Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGG 22502 || |||| || || || |||||||||| ||||| | || || ||||| ||||||| Sbjct 16076 CAACCAGGGGTTGACAACCTGGAACTCGCCGG-CAAGAACACGACGCTGGTAGATGTTGG 16134 Query 22503 ATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCA 22562 | ||| | || ||||| | || ||||| |||| ||||| | || || || || |||| Sbjct 16135 AGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCA 16194 Query 22563 TCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCAT 22620 | || || | || | ||| | || ||||||| |||| | | || ||| || Sbjct 16195 TGGGGGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAAT 16254 Query 22621 CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACG 22678 | ||||||||| ||||| || ||| | ||||| |||||| ||||| || | | || Sbjct 16255 C--CCAGTCCCAAAGATCAGAGGGCTTGACATT---CCACATGTCGTACTGAAGGATACC 16309 Query 22679 CCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTT-- 22736 | | || ||| ||| |||||||| ||| | || | | ||| || | Sbjct 16310 CTGGGAGATA--GGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGA 16367 Query 22737 -CGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG 22795 || | | | | | || ||| || || ||||| ||||| |||||||| | || Sbjct 16368 ACGGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCA 16424 Query 22796 GCGGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACC 22851 ||| || ||| ||| | ||||| || | | ||| || || || | ||| Sbjct 16425 CGGGCCTCAGGAGAC----TCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACC 16480 Query 22852 CTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCA 22907 ||| || || | ||| || || |||| || || || |||| |||||| | Sbjct 16481 CTGGACACCAAGACCAATGGGGCGGTGACGCATGTTG----CTATTGCGAGCCTCGGGAA 16536 Query 22908 AAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNN 22967 || || || ||| || | |||||||||| | || | | || | Sbjct 16537 CGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCT 16596 Query 22968 NNNNNNNNNNNTCAAAGTCGTAAACGCC--CGATTGTA--CAACAAACTTGTTGACGGCG 23023 | ||||| || || || || ||||| |||| || || | ||| Sbjct 16597 CGTGAAGCTTCTGGAAGTCATAGACACCATCG-TTGTAGTCAACGAAGGTGGGCAGGGCA 16655 Query 23024 ATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA-CGT-GTACTCTACAATTTCGG 23081 | || || | ||||| || || ||||| || ||| || |||||| | || || | Sbjct 16656 AGGGAAGCCAAGTTGCAGACAGCGACCTCATCG--GGAGCGCAGTACTCAATGATCTCAG 16713 Query 23082 TACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACG 23141 | || || ||| | || || |||| || |||||||||| || || ||| | Sbjct 16714 TGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGG 16773 Query 23142 AATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCC 23201 |||||||||||||||| | || |||| |||||| ||| | ||| | ||| || || Sbjct 16774 CATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACC 16833 Query 23202 ACATAGTCTGAGCGTGAACACGTCGCACGTACC-TGCCTTCTTCCTCGTACTTTTGGTAC 23260 | | |||| || | | | ||| || || |||| || |||||||| | |||| Sbjct 16834 AAAGCTTCTGGGCCTTGATA-GTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTAC 16892 Query 23261 AACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320 || || || || || | ||||| ||||| |||| ||| || | | | || |||||| Sbjct 16893 AAGGCCTCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATG 16952 Query 23321 AGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380 || |||| | || || || || | |||| || ||||| || ||||| |||||| Sbjct 16953 AGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCG 17012 Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440 ||| || ||||| || || |||||||| |||||| |||||| ||| |||| || Sbjct 17013 AGGAAAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAAC 17072 Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || || || || ||||| ||||| ||||||| ||| || || || || | ||| ||| Sbjct 17073 TCGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTG 17132 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 || ||||| |||||||| || || ||||||||| | || | ||||| || | || |||| Sbjct 17133 CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCG 17192 Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 || || | ||| ||| || | || || | || || | |||| ||| | Sbjct 17193 TTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTG 17252 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 | ||| ||||| || || || || ||||| ||||| || || |||||||| || Sbjct 17253 AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATA 17312 Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG-GG 23739 ||||| || ||| || || | |||| | ||| || ||||||| || || || || Sbjct 17313 CCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGG 17371 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATT 23799 ||| | || ||| ||||| ||| |||||| || ||| | | ||||| || || Sbjct 17372 GGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTT 17431 Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859 ||| || |||||| | || | || || || || |||| || || ||||| || Sbjct 17432 GTAGGTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCATGAT 17491 Query 23860 CATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919 ||||| |||||||||||| | | ||||| || || | ||| ||||| | | || Sbjct 17492 CATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAGGTATGATCTCTCCAA 17551 Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || || || || | ||||| ||||| || |||| || ||||| || Sbjct 17552 GGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGA 17605 >seq1284 Length=15898 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 6045 CAATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGT 6104 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 6105 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 6164 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| || || ||| | || ||| || || ||| | Sbjct 6165 ACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACT 6224 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || || || ||||| || | ||| | || |||| Sbjct 6225 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTA 6278 >seq1474 Length=13610 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| ||||| || | || || || | || Sbjct 6439 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACGATTACGTTGGAAGTCGAGTCATCT 6380 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||| ||||| || | || ||||||||| Sbjct 6379 GACACGATTGATAACGTGAAGTCCAAGATTCAGGATAAGGAGGGTATTCCTCCCGACCAG 6320 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || |||||||||||| | || ||||||| |||||| Sbjct 6319 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGACGGTCGTACCCTGAGCGACTATAAC 6260 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || ||||| || || Sbjct 6259 ATCCAGAAGGAGTCAACCCTGCATCTCGTCCT 6228 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || ||||| || ||||| ||||| || |||| |||||| | || Sbjct 6667 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 6608 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || |||||||| || | || ||||||||| Sbjct 6607 GACACCATTGACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCAG 6548 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || ||| | || || | ||| || || || ||| Sbjct 6547 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGACTACAAC 6488 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || ||||| || || | ||| | || |||| Sbjct 6487 ATTCAGAAGGAGTCAACCCTGCATCTCGTCCTGCGTCTGCGTGGTGGTA 6439 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || |||||| |||| || || | ||||| | |||| | ||||| Sbjct 7157 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGATACCATCGACAACGTCAAGTCC 7098 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || ||||||||| || | || ||||||||||||||||| || ||||||||||| Sbjct 7097 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCTGGCAAG 7038 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 ||| | || ||| || | |||||| ||||| || || || || || ||||| Sbjct 7037 CAGCTTGAGGACGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCTACCCTTCAC 6978 Query 31397 CTGGTACT 31404 |||| || Sbjct 6977 TTGGTTCT 6970 >seq1802 Length=45256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 201/300 (67%), Gaps = 5/300 (2%) Strand=Plus/Minus Query 57563 TCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622 |||||| | ||| | |||||||| ||||| || || || || ||||||| ||| || | Sbjct 29951 TCCAGA--TCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGAT 29894 Query 57623 AGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTT 57679 || || || |||||||| ||| ||| | | |||| || ||||| | || Sbjct 29893 TGATCTCTCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTT 29834 Query 57680 TATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || ||| | | || || |||||||| || |||||||| || |||||||| | || Sbjct 29833 CATCTCTCACATTCTTGCCTTCTTCGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGT 29774 Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 || | || || || || || || | ||||| | ||||| ||||| || || | Sbjct 29773 TGAGCGCTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGAT 29714 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || ||| | || || || | || || || ||||||||||| ||| | ||||| Sbjct 29713 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGA 29654 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 58020 TTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 ||||| | || || ||| | ||||| || || || |||||||| ||||| || |||| Sbjct 29236 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAAC 29177 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||| | || || || || ||||| || || || || ||||| ||||| ||||||||||| Sbjct 29176 GAGCTCATCTCCCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGTACTCTCAC 29117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445751834582880