Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq719 93.3 8e-14 >seq719 Length=48969 Score = 93.3 bits (102), Expect = 8e-14 Identities = 121/168 (72%), Gaps = 12/168 (7%) Strand=Plus/Plus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| ||||| || || || ||||||||||| |||| ||||||||||| | | ||| Sbjct 16862 ACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCTCGAACTCTTCGCCGTAGCAGTC 16921 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505 | | |||||||||||| | ||||||||| |||| ||| ||||| || Sbjct 16922 AGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTT------CTC 16975 Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 ||||||| |||||| ||||| | | ||||| ||| |||||||||| Sbjct 16976 GACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATC 17023 Score = 86.0 bits (94), Expect = 1e-11 Identities = 172/250 (69%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||| |||||||||| || || ||| || || || |||||||||||||| Sbjct 17262 CCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCAATA 17321 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT-CCACA 94910 || || | | | | | |||||||| || || || ||| ||| | | ||| Sbjct 17322 GAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCAC-TGAGGGGTACCAGC 17380 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 || || ||||||||||| || ||||| || | | || |||||||| | || || || Sbjct 17381 GTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTC 17440 Query 94971 AATGACAGATTTGATG-TCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCT 95029 |||||| | || | | | | || | |||||||| || |||||||| ||||||| || Sbjct 17441 GATGACACGCTCGACGTTATCACCCCAG-ATGCCGACTGCAACACGCATGATCATGTGCT 17499 Query 95030 GAGGGCGCTC 95039 |||| | ||| Sbjct 17500 GAGGTCTCTC 17509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989550856976370