Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq719 93.3 8e-14
>seq719
Length=48969
Score = 93.3 bits (102), Expect = 8e-14
Identities = 121/168 (72%), Gaps = 12/168 (7%)
Strand=Plus/Plus
Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451
||| ||||| || || || ||||||||||| |||| ||||||||||| | | |||
Sbjct 16862 ACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCTCGAACTCTTCGCCGTAGCAGTC 16921
Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505
| | |||||||||||| | ||||||||| |||| ||| ||||| ||
Sbjct 16922 AGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTT------CTC 16975
Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553
||||||| |||||| ||||| | | ||||| ||| ||||||||||
Sbjct 16976 GACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATC 17023
Score = 86.0 bits (94), Expect = 1e-11
Identities = 172/250 (69%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851
|| ||||| |||||||||| || || ||| || || || ||||||||||||||
Sbjct 17262 CCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCAATA 17321
Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT-CCACA 94910
|| || | | | | | |||||||| || || || ||| ||| | | |||
Sbjct 17322 GAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCAC-TGAGGGGTACCAGC 17380
Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970
|| || ||||||||||| || ||||| || | | || |||||||| | || || ||
Sbjct 17381 GTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTC 17440
Query 94971 AATGACAGATTTGATG-TCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCT 95029
|||||| | || | | | | || | |||||||| || |||||||| ||||||| ||
Sbjct 17441 GATGACACGCTCGACGTTATCACCCCAG-ATGCCGACTGCAACACGCATGATCATGTGCT 17499
Query 95030 GAGGGCGCTC 95039
|||| | |||
Sbjct 17500 GAGGTCTCTC 17509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989550856976370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |