Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq719 147 3e-30 >seq719 Length=48969 Score = 147 bits (162), Expect = 3e-30 Identities = 459/704 (65%), Gaps = 14/704 (2%) Strand=Plus/Plus Query 63214 CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63273 |||| | ||| || |||| || ||||| | | ||| || ||| | || |||| | Sbjct 16924 CCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCT 16983 Query 63274 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGT 63333 |||| || ||||| || ||||| ||||| | || ||||| | | | ||||| | Sbjct 16984 TCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCGCGAGCACGGACCTCCTCCT 17043 Query 63334 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63393 | || ||||| | || | |||| | | | ||| | ||||| || || | || Sbjct 17044 TGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGT 17103 Query 63394 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63453 | ||||| | | ||||| || ||||| || ||||| || | ||| | ||| ||||| | Sbjct 17104 AAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGT 17163 Query 63454 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63513 | | || | | ||| ||||| | |||||| ||| |||| ||||| |||| || ||| Sbjct 17164 TGAAGACACGAAGCATGGGAATGACACCGTTCGATGTACCGTTGGTGCCGGCAATGTAGG 17223 Query 63514 CTCCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATT 63572 ||| | ||||| ||| | | | | ||||| || || || ||||| || ||||| Sbjct 17224 AGCCAGTAGCACGGATACGG-TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATC 17282 Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632 | ||||| || | ||||| || || || || || || || |||||| | Sbjct 17283 ATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCGACG 17342 Query 63633 AGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63692 || || || ||||| ||| ||| || || || || || | || || || ||| Sbjct 17343 AGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCG 17402 Query 63693 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA----GCT-GAGTCTAT-A 63746 || || || | || || | || ||||| ||||| || ||| || ||| | Sbjct 17403 TGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACACGCTCGACGTTATCA 17462 Query 63747 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATT 63806 |||| |||| || ||||| |||||||| | ||||||||||||||| || |||| Sbjct 17463 CCCCA--GATG----CCGACTGCAACACGCATGATCATGTGCTGAGGTCTCTCGGCAATC 17516 Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 ||| || | || | || ||| ||| | ||||| || || || || || || | ||| Sbjct 17517 TTGCCGTCAAGCTTAAGCAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAG 17576 Query 63867 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 ||||| || ||||| | ||| | || | ||||| ||||| Sbjct 17577 TTGAAGTCGCGGTCGTAGACAATGGCAGAGTCGAGCTCTTCCTT 17620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629797020709920