Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq719 138 2e-27
>seq719
Length=48969
Score = 138 bits (152), Expect = 2e-27
Identities = 623/974 (64%), Gaps = 24/974 (2%)
Strand=Plus/Plus
Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTCAGTGCA 79679
|| |||| || || || || ||||||| | | | ||| || | || || ||||||||
Sbjct 16659 GAAGCCAAGTTGCAGACAGCGACCTCATCGGGAGC-GCAGTACTCAATGATCTCAGTGCA 16717
Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739
|||||| | |||||||| | || | || || ||||| ||| |||||
Sbjct 16718 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 16777
Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799
||| || || ||||| || | ||||| || |||||| || | || || | ||| |
Sbjct 16778 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAA- 16836
Query 79800 GACTC-GAGCCTTTATTATAGACTTGTATCTCTTT---TCTCTTTCGTATTGTGTATATA 79855
| || | ||||| || || |||| | ||| || | |||||| | || |
Sbjct 16837 GCTTCTGGGCCTTGAT---AGTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACA 16893
Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915
| |||||||| || || | || | || ||||| || || | || ||||| |
Sbjct 16894 AGGCCTCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGA 16953
Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975
| ||| || | | | || |||| ||||| || ||||| || ||||| ||||| |
Sbjct 16954 GGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGA 17013
Query 79976 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 80035
|| ||||| | | | |||||| || || ||||| | || | ||||
Sbjct 17014 GGAAAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACT 17073
Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095
| | | ||| | ||||| || || | ||| ||||| | | || || || ||||| |
Sbjct 17074 CGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGC 17133
Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155
| ||||| || | ||| | ||| ||||| || | || | | ||| ||||| | ||| |
Sbjct 17134 CACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGT 17193
Query 80156 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT- 80214
| |||||||| ||||| |||| || ||| ||| | ||||| ||| | | | |
Sbjct 17194 TCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGG-TGAGCGTTG 17252
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
||||| || || || ||||| || ||||| | ||||| || | || || || ||
Sbjct 17253 AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATA 17312
Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334
||||| || || || |||||| | || || || ||||| ||| ||
Sbjct 17313 CCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGG 17372
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
|| || || || || | || || || ||||| || || | || |||| || |||
Sbjct 17373 GTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTG 17432
Query 80395 TACGTCTCAATA----GCT-GATTCTAT-ATCCCATTGATGAATTCCTACCGCGACACGC 80448
|| ||||| || ||| || ||| | |||| |||| || || || ||||||
Sbjct 17433 TAGGTCTCGATGACACGCTCGACGTTATCACCCCA--GATG----CCGACTGCAACACGC 17486
Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508
|| | ||||||||||||||| || | |||||| | | || | || ||| ||| |
Sbjct 17487 ATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAGGTATGATCTC 17546
Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568
||||| || || || || || || | ||| ||||| || ||||| | ||| | |||
Sbjct 17547 TCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGAG 17606
Query 80569 TTGAGTTTATCCTT 80582
| ||| | |||||
Sbjct 17607 TCGAGCTCTTCCTT 17620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718245330566960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |