Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq719 138 2e-27 >seq719 Length=48969 Score = 138 bits (152), Expect = 2e-27 Identities = 623/974 (64%), Gaps = 24/974 (2%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTCAGTGCA 79679 || |||| || || || || ||||||| | | | ||| || | || || |||||||| Sbjct 16659 GAAGCCAAGTTGCAGACAGCGACCTCATCGGGAGC-GCAGTACTCAATGATCTCAGTGCA 16717 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 |||||| | |||||||| | || | || || ||||| ||| ||||| Sbjct 16718 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 16777 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| || || ||||| || | ||||| || |||||| || | || || | ||| | Sbjct 16778 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAA- 16836 Query 79800 GACTC-GAGCCTTTATTATAGACTTGTATCTCTTT---TCTCTTTCGTATTGTGTATATA 79855 | || | ||||| || || |||| | ||| || | |||||| | || | Sbjct 16837 GCTTCTGGGCCTTGAT---AGTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACA 16893 Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915 | |||||||| || || | || | || ||||| || || | || ||||| | Sbjct 16894 AGGCCTCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGA 16953 Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 | ||| || | | | || |||| ||||| || ||||| || ||||| ||||| | Sbjct 16954 GGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGA 17013 Query 79976 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 80035 || ||||| | | | |||||| || || ||||| | || | |||| Sbjct 17014 GGAAAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACT 17073 Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095 | | | ||| | ||||| || || | ||| ||||| | | || || || ||||| | Sbjct 17074 CGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGC 17133 Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155 | ||||| || | ||| | ||| ||||| || | || | | ||| ||||| | ||| | Sbjct 17134 CACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGT 17193 Query 80156 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT- 80214 | |||||||| ||||| |||| || ||| ||| | ||||| ||| | | | | Sbjct 17194 TCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGG-TGAGCGTTG 17252 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 ||||| || || || ||||| || ||||| | ||||| || | || || || || Sbjct 17253 AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATA 17312 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 ||||| || || || |||||| | || || || ||||| ||| || Sbjct 17313 CCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGG 17372 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | || || || ||||| || || | || |||| || ||| Sbjct 17373 GTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTG 17432 Query 80395 TACGTCTCAATA----GCT-GATTCTAT-ATCCCATTGATGAATTCCTACCGCGACACGC 80448 || ||||| || ||| || ||| | |||| |||| || || || |||||| Sbjct 17433 TAGGTCTCGATGACACGCTCGACGTTATCACCCCA--GATG----CCGACTGCAACACGC 17486 Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508 || | ||||||||||||||| || | |||||| | | || | || ||| ||| | Sbjct 17487 ATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAGGTATGATCTC 17546 Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568 ||||| || || || || || || | ||| ||||| || ||||| | ||| | ||| Sbjct 17547 TCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGAG 17606 Query 80569 TTGAGTTTATCCTT 80582 | ||| | ||||| Sbjct 17607 TCGAGCTCTTCCTT 17620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718245330566960