Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq719 138 2e-27 >seq719 Length=48969 Score = 138 bits (152), Expect = 2e-27 Identities = 629/984 (64%), Gaps = 24/984 (2%) Strand=Plus/Plus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 || ||||| || |||| || || || || ||||||| | | || || | || || Sbjct 16649 CAGGGCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGAT 16708 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 |||||||| || || | ||||||||| | || | || || ||||| ||| Sbjct 16709 CTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTT 16768 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 |||||||| || || || || || | ||||| || |||||| || | || || Sbjct 16769 GGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGC 16828 Query 71874 TTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTT---TCTCTTTCGTATT 71929 | ||| | | || | ||||| || | ||||| | ||| || | |||||| | Sbjct 16829 ATACCAAA-GCTTCTGGGCCTTGAT---AGTCTTGCGACCCTTGCCCTCGCGTTCGTACT 16884 Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTC 71988 || || |||||||| || || | ||| | | || ||||| || ||||| Sbjct 16885 TCTCGTACAAGGCCTCGAACTCTTCGCCGTA-GCAGTCAGCCAAGCCAGGGCACTCATTG 16943 Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 || ||||| | | ||| || | | | | |||| ||||| || ||||| || ||| Sbjct 16944 GGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATC 17003 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 || ||||| | || ||||| | | | |||||| || || ||||| | Sbjct 17004 CAGAGAGCGAGGAAAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAG 17063 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 || | |||| | | | ||| | ||||| || || | ||| ||||| | | || || Sbjct 17064 TCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGA 17123 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 || ||||| || ||||| || | ||| | ||| ||||| || | || | | ||| ||| Sbjct 17124 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGA 17183 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG 72288 || | ||| || |||| ||| ||||| |||| || ||| ||| | ||||| ||| | Sbjct 17184 ATGACACCGTTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGG 17243 Query 72289 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 | | | | ||||| || || || ||||| || ||||| | ||||| || | || Sbjct 17244 -TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGT 17302 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 72407 || || || ||||| ||| || ||| |||||| | || || || ||||| || Sbjct 17303 GTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG 17362 Query 72408 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 72467 | || || || || || || | || || || ||||| || || | || || Sbjct 17363 GCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA 17422 Query 72468 CAGTAGATTGTACGTCTCAATA----GCT-GATTCTAT-ATCCCATTGATGTATTCCTAC 72521 || || ||||| ||||| || ||| || ||| | |||| |||| || || Sbjct 17423 CATGAGGTTGTAGGTCTCGATGACACGCTCGACGTTATCACCCCA--GATG----CCGAC 17476 Query 72522 CGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 72581 || |||||||| | ||| ||||||||||| || | |||||| | | || | || Sbjct 17477 TGCAACACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAG 17536 Query 72582 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 72641 ||| ||| | ||||| || || || || || || | ||| ||||| || ||||| | Sbjct 17537 GTATGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGAC 17596 Query 72642 AATAACCGAATTGAGTTTATCCTT 72665 ||| | || | ||| | ||||| Sbjct 17597 AATGGCAGAGTCGAGCTCTTCCTT 17620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671117270526640