Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq719 138 2e-27
>seq719
Length=48969
Score = 138 bits (152), Expect = 2e-27
Identities = 629/984 (64%), Gaps = 24/984 (2%)
Strand=Plus/Plus
Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753
|| ||||| || |||| || || || || ||||||| | | || || | || ||
Sbjct 16649 CAGGGCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGAT 16708
Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813
|||||||| || || | ||||||||| | || | || || ||||| |||
Sbjct 16709 CTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTT 16768
Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873
|||||||| || || || || || | ||||| || |||||| || | || ||
Sbjct 16769 GGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGC 16828
Query 71874 TTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTT---TCTCTTTCGTATT 71929
| ||| | | || | ||||| || | ||||| | ||| || | |||||| |
Sbjct 16829 ATACCAAA-GCTTCTGGGCCTTGAT---AGTCTTGCGACCCTTGCCCTCGCGTTCGTACT 16884
Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTC 71988
|| || |||||||| || || | ||| | | || ||||| || |||||
Sbjct 16885 TCTCGTACAAGGCCTCGAACTCTTCGCCGTA-GCAGTCAGCCAAGCCAGGGCACTCATTG 16943
Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048
|| ||||| | | ||| || | | | | |||| ||||| || ||||| || |||
Sbjct 16944 GGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATC 17003
Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108
|| ||||| | || ||||| | | | |||||| || || ||||| |
Sbjct 17004 CAGAGAGCGAGGAAAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAG 17063
Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168
|| | |||| | | | ||| | ||||| || || | ||| ||||| | | || ||
Sbjct 17064 TCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGA 17123
Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228
|| ||||| || ||||| || | ||| | ||| ||||| || | || | | ||| |||
Sbjct 17124 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGA 17183
Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG 72288
|| | ||| || |||| ||| ||||| |||| || ||| ||| | ||||| ||| |
Sbjct 17184 ATGACACCGTTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGG 17243
Query 72289 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347
| | | | ||||| || || || ||||| || ||||| | ||||| || | ||
Sbjct 17244 -TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGT 17302
Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 72407
|| || || ||||| ||| || ||| |||||| | || || || ||||| ||
Sbjct 17303 GTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG 17362
Query 72408 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 72467
| || || || || || || | || || || ||||| || || | || ||
Sbjct 17363 GCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA 17422
Query 72468 CAGTAGATTGTACGTCTCAATA----GCT-GATTCTAT-ATCCCATTGATGTATTCCTAC 72521
|| || ||||| ||||| || ||| || ||| | |||| |||| || ||
Sbjct 17423 CATGAGGTTGTAGGTCTCGATGACACGCTCGACGTTATCACCCCA--GATG----CCGAC 17476
Query 72522 CGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 72581
|| |||||||| | ||| ||||||||||| || | |||||| | | || | ||
Sbjct 17477 TGCAACACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAG 17536
Query 72582 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 72641
||| ||| | ||||| || || || || || || | ||| ||||| || ||||| |
Sbjct 17537 GTATGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGAC 17596
Query 72642 AATAACCGAATTGAGTTTATCCTT 72665
||| | || | ||| | |||||
Sbjct 17597 AATGGCAGAGTCGAGCTCTTCCTT 17620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671117270526640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |