Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq719 159 5e-34
seq1802 129 9e-25
>seq719
Length=48969
Score = 159 bits (176), Expect = 5e-34
Identities = 315/461 (68%), Gaps = 4/461 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || || | ||| | ||| | || || |||||||| ||
Sbjct 17140 CAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAGCCCTGGCACGCCGAT 17081
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || || || ||||||| ||| ||| || |||| || || | ||
Sbjct 17080 GTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCTCGCGAT 17021
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || |||||| | || ||| ||||||||||| | ||| | | | | ||
Sbjct 17020 CTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAC 16961
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| ||| ||||||||| | || || || || | || |||| |||||||||||
Sbjct 16960 TGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTGCTACGGCGAAGAGTTC 16901
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174
|||||| |||| | ||||| | |||||| | || |||| | || | || |
Sbjct 16900 GAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTCGCAAGACTA-TCAAGGC-CC 16843
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| || ||| | |||||| | ||||||| |||||||| | || | ||| ||||
Sbjct 16842 AGAAGCTTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTCT 16783
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
|||||||| ||| || ||||| |||||||| || |||| |||||| ||||||
Sbjct 16782 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCGCAGCTCCA 16723
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
| || ||||| || || | |||||| | |||| || |||
Sbjct 16722 ACCTCTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAG 16682
>seq1802
Length=45256
Score = 129 bits (142), Expect = 9e-25
Identities = 197/271 (73%), Gaps = 10/271 (4%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| ||||| |||| ||||| ||||| | ||| ||| | |||||
Sbjct 29946 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 29887
Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137
|||||||| || |||| ||| | | | | | || || |||| | || || ||
Sbjct 29886 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GATGATGAGAAGTACTTCATCTC 29828
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196
|||||| | |||||||| |||| || ||||| ||||||||||| || || ||||| |
Sbjct 29827 TCACATTCTTGCCTTCTTCGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGA-GC 29769
Query 125197 GATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253
| ||||| ||| | ||| | || |||| ||| ||||| ||||| ||||| ||||
Sbjct 29768 GCTTCTCCGGCGAG--GTCCAGGTCCCCGAGG-CTCGCTGCTTCTACGGCTTCCAGATCA 29712
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTC 125284
|||| |||||| | ||||| || | |||||
Sbjct 29711 TGATGGAGAACATCCACTCTGAGACCTACTC 29681
Score = 87.8 bits (96), Expect = 3e-12
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530
|||||| ||||||| |||||||||||||| || ||||||||||| ||||| | ||
Sbjct 29237 TTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAA 29178
Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
|||| | || || || || |||||||| ||| |||||||||
Sbjct 29177 CGAGCTCATCTCCCGTGATGAGGGCCTGCACACCGACTTTGCC 29135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741034985890640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |