Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq719 159 5e-34 seq1802 129 9e-25 >seq719 Length=48969 Score = 159 bits (176), Expect = 5e-34 Identities = 315/461 (68%), Gaps = 4/461 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| | ||| | || || |||||||| || Sbjct 17140 CAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAGCCCTGGCACGCCGAT 17081 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || || || ||||||| ||| ||| || |||| || || | || Sbjct 17080 GTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCTCGCGAT 17021 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||| | || ||| ||||||||||| | ||| | | | | || Sbjct 17020 CTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAC 16961 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||||||| | || || || || | || |||| ||||||||||| Sbjct 16960 TGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTGCTACGGCGAAGAGTTC 16901 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 |||||| |||| | ||||| | |||||| | || |||| | || | || | Sbjct 16900 GAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTCGCAAGACTA-TCAAGGC-CC 16843 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | ||||||| |||||||| | || | ||| |||| Sbjct 16842 AGAAGCTTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTCT 16783 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| ||| || ||||| |||||||| || |||| |||||| |||||| Sbjct 16782 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATCCGCAGCTCCA 16723 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || ||||| || || | |||||| | |||| || ||| Sbjct 16722 ACCTCTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAG 16682 >seq1802 Length=45256 Score = 129 bits (142), Expect = 9e-25 Identities = 197/271 (73%), Gaps = 10/271 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | ||| ||| | ||||| Sbjct 29946 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 29887 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||| ||| | | | | | || || |||| | || || || Sbjct 29886 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GATGATGAGAAGTACTTCATCTC 29828 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 |||||| | |||||||| |||| || ||||| ||||||||||| || || ||||| | Sbjct 29827 TCACATTCTTGCCTTCTTCGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGA-GC 29769 Query 125197 GATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 | ||||| ||| | ||| | || |||| ||| ||||| ||||| ||||| |||| Sbjct 29768 GCTTCTCCGGCGAG--GTCCAGGTCCCCGAGG-CTCGCTGCTTCTACGGCTTCCAGATCA 29712 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTC 125284 |||| |||||| | ||||| || | ||||| Sbjct 29711 TGATGGAGAACATCCACTCTGAGACCTACTC 29681 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 |||||| ||||||| |||||||||||||| || ||||||||||| ||||| | || Sbjct 29237 TTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAA 29178 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||| | || || || || |||||||| ||| ||||||||| Sbjct 29177 CGAGCTCATCTCCCGTGATGAGGGCCTGCACACCGACTTTGCC 29135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741034985890640