Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 113 1e-19
>seq1474
Length=13610
Score = 113 bits (124), Expect = 1e-19
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || |||||||| || ||||| || || || | ||||| || ||||| || |||
Sbjct 6699 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCA 6758
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | ||| || ||||| || || || || |||||||||||||| | ||
Sbjct 6759 GCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGAATCTTCGACTTG 6818
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||||| || || ||||| || || || ||||| ||||| || ||
Sbjct 6819 ACATTGTCGATAGTATCAGAAGACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGCGTC 6878
Query 104543 TTTAC 104547
|| ||
Sbjct 6879 TTGAC 6883
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || ||||| || |||||||| || || | |||||||
Sbjct 6228 AGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTACGACCGTCT 6287
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | || |||||||| || || || | ||| || || ||||| || || || ||||||
Sbjct 6288 TCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCC 6347
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| | || || || || | || || | || || || | ||||| |||
Sbjct 6348 TGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTC 6407
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| | || || || || ||||||||
Sbjct 6408 TTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439
Score = 87.8 bits (96), Expect = 4e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| || || || || || || || | ||||| || || || || |||
Sbjct 6985 GTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 7044
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || | ||| || || || || || || || || ||||||||||| | ||
Sbjct 7045 GCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGAATCTTGGACTTG 7104
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || | ||||||| | || ||||| || || || ||||| || ||
Sbjct 7105 ACGTTGTCGATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 7157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151359837508712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |