Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq657 125 6e-24 >seq657 Length=61752 Score = 125 bits (138), Expect = 6e-24 Identities = 184/255 (72%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCC-ACCTC 5559 ||||| ||| ||||||||||| ||||| | | | || || || | || | ||||| Sbjct 3813 ACGCCGGTGCTGCCGAATCCGCCAGCGCCGCGCACGCTCTCCTCGAG-CTCGACGACCTC 3755 Query 5560 TTCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618 | || ||||| | | || ||||||| ||| ||||| || || ||||||||| Sbjct 3754 GACGACCTCGGG-AGTGAAGATGCGCTCGATGATGAGCTGGGCGATGCGGTCGCCCTCGG 3696 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 ||||| || || ||| | || |||||| || | || || | ||||||||||| Sbjct 3695 CGACCTCAAAGTCAGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGT 3636 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 ||||||| || ||||| ||||| ||||||||||| |||| || ||||| ||||||| Sbjct 3635 CGGCGTCGATGACGCCGGCGCCGGTGTCGATGAAGTTCTTGGAAGCGAGGCCAGAGCGGG 3576 Query 5739 GAGCCACGCGGCCGT 5753 |||| |||||||||| Sbjct 3575 GAGCAACGCGGCCGT 3561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430040699273168