Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq657 125 6e-24
>seq657
Length=61752
Score = 125 bits (138), Expect = 6e-24
Identities = 184/255 (72%), Gaps = 4/255 (2%)
Strand=Plus/Minus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCC-ACCTC 5559
||||| ||| ||||||||||| ||||| | | | || || || | || | |||||
Sbjct 3813 ACGCCGGTGCTGCCGAATCCGCCAGCGCCGCGCACGCTCTCCTCGAG-CTCGACGACCTC 3755
Query 5560 TTCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618
| || ||||| | | || ||||||| ||| ||||| || || |||||||||
Sbjct 3754 GACGACCTCGGG-AGTGAAGATGCGCTCGATGATGAGCTGGGCGATGCGGTCGCCCTCGG 3696
Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678
||||| || || ||| | || |||||| || | || || | |||||||||||
Sbjct 3695 CGACCTCAAAGTCAGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGT 3636
Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738
||||||| || ||||| ||||| ||||||||||| |||| || ||||| |||||||
Sbjct 3635 CGGCGTCGATGACGCCGGCGCCGGTGTCGATGAAGTTCTTGGAAGCGAGGCCAGAGCGGG 3576
Query 5739 GAGCCACGCGGCCGT 5753
|||| ||||||||||
Sbjct 3575 GAGCAACGCGGCCGT 3561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430040699273168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |