Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1474 87.8 2e-12 >seq1474 Length=13610 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| || |||||| || ||||||||||| | || || || ||||||| Sbjct 6973 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATC-GGAAAGGGTGCGGCCGTCCTC 7031 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || |||| | ||||||||| || || | || ||||||||| Sbjct 7032 AAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTG 7091 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||||| | | || |||||||||| ||||| ||||| || ||||| Sbjct 7092 AATCTTGGACTTGACGTTGTCG--ATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTC 7149 Query 48695 TTACCGGTGA 48704 || ||||||| Sbjct 7150 TTGCCGGTGA 7159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421237779726614