Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 87.8 2e-12
>seq1474
Length=13610
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/190 (72%), Gaps = 6/190 (3%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| || ||||| || |||||| || ||||||||||| | || || || |||||||
Sbjct 6973 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATC-GGAAAGGGTGCGGCCGTCCTC 7031
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| || || |||| | ||||||||| || || | || |||||||||
Sbjct 7032 AAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTG 7091
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
||| || ||||| | | || |||||||||| ||||| ||||| || |||||
Sbjct 7092 AATCTTGGACTTGACGTTGTCG--ATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTC 7149
Query 48695 TTACCGGTGA 48704
|| |||||||
Sbjct 7150 TTGCCGGTGA 7159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421237779726614
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |