Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1753 104 4e-18
seq963 96.9 5e-16
>seq1753
Length=22757
Score = 104 bits (114), Expect = 4e-18
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | || || ||||| || || ||||||||||| |||||
Sbjct 4782 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATTCAGGGTATCACCAAGCCTGCTAT 4724
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 4723 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 4683
Score = 89.7 bits (98), Expect = 8e-14
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| ||||| ||| | ||| ||||||| || || || | |||||
Sbjct 4621 TGATCTACGAGGAGACTCGTGGTGTCCTTAAGTCCTTCCTCGAGGGTGTCATTCGTGATG 4562
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| || |||||||| || || ||||||||||| || | ||| | ||||| |
Sbjct 4561 CCGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACTTCTCTTGATGTTGTCTACG 4502
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| ||||| || ||||| || | | || ||||| || |||||
Sbjct 4501 CGTTGAAGCGCCAAGGTCGCACCCTGTACGGTTTCGGTGGTTAA 4458
>seq963
Length=12570
Score = 96.9 bits (106), Expect = 5e-16
Identities = 84/102 (82%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| | | || || ||||| || || ||||| ||||| ||||
Sbjct 11335 CGCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATTCAGGGTATCACTAAGCCCGCTA 11277
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||| ||||| |||||||||||||| ||||||||| | ||||
Sbjct 11276 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 11235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79072810001502
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |