Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1753 104 4e-18 seq963 96.9 5e-16 >seq1753 Length=22757 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | || || ||||| || || ||||||||||| ||||| Sbjct 4782 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATTCAGGGTATCACCAAGCCTGCTAT 4724 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| |||||||||||||| ||||||||| | |||| Sbjct 4723 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 4683 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| ||||| ||| | ||| ||||||| || || || | ||||| Sbjct 4621 TGATCTACGAGGAGACTCGTGGTGTCCTTAAGTCCTTCCTCGAGGGTGTCATTCGTGATG 4562 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || |||||||| || || ||||||||||| || | ||| | ||||| | Sbjct 4561 CCGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACTTCTCTTGATGTTGTCTACG 4502 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | ||||| || ||||| || | | || ||||| || ||||| Sbjct 4501 CGTTGAAGCGCCAAGGTCGCACCCTGTACGGTTTCGGTGGTTAA 4458 >seq963 Length=12570 Score = 96.9 bits (106), Expect = 5e-16 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| | | || || ||||| || || ||||| ||||| |||| Sbjct 11335 CGCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATTCAGGGTATCACTAAGCCCGCTA 11277 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| |||||||||||||| ||||||||| | |||| Sbjct 11276 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 11235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072810001502