Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq719 407 4e-108 >seq719 Length=48969 Score = 407 bits (450), Expect = 4e-108 Identities = 1079/1628 (66%), Gaps = 30/1628 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| ||||| || | | | ||| ||||||| Sbjct 17410 TTCACCCACGCCTCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCA 17351 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || || || |||||||| | ||||| || |||| Sbjct 17350 TGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATTTACGACACCCTCAAGACC 17291 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 || || | || ||||||| || || || |||||| | | || || || | | ||||| Sbjct 17290 TGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTC-ACCGTATCCGTGC 17232 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 || | | |||||| |||||| || ||| ||||| || | ||||||||||| Sbjct 17231 TACTGG-CTCCTACATTGCCGGCACCAACGG-TACATCGAACGGTGTCATTCCCATGCTT 17174 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 ||||| || |||| ||||| | ||||||||||||||||| ||||| || || Sbjct 17173 CGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCC 17114 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 || || || || || ||||| || |||||| | || ||||| | || | || || Sbjct 17113 TTCGCCATTTACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAG 17054 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || ||||| | ||||| || ||||| ||| || || ||| | | || Sbjct 17053 AACCACGGCAAGGAGGAGGTCCGTGCTCGCGATCTTTTCCTCGCTCTCTGGATCCCCGAT 16994 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAAT 364021 | || |||||| | || ||| | | | | | ||| | ||| | ||||| | || | Sbjct 16993 CTGTTCATGAAGAGAGTCGAG--AAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGT 16936 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || | | || | || || || | | || | ||||| ||||| ||| Sbjct 16935 GCCCTGGCTTGGCTGACTGCTACGGCGAAGAGTTCGAGGCCTTGTACGAGAAGTACGAAC 16876 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 ||||| |||| ||| ||||| || || |||||||| |||| ||||||| | || Sbjct 16875 GCGAGGGCAAGGGTCGCAAGACTATCAAGGCCCAGAAGCTTTGGTATGCCATCCTTGAGG 16816 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| ||||| || | |||| ||| | ||||| ||| | |||||||||| || Sbjct 16815 CTCAGACCGAGACTGGCAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCA 16756 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||| || || || | |||| | ||||| || || ||||| ||||| ||| Sbjct 16755 ACCAGAAGAACCTGGGAACCATCC-GCAGCTCCAACCTCTGCACTGAGATCATTGAGTAC 16697 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA 364320 ||||||||| ||| || || || ||| | || || | || || || | || || Sbjct 16696 TGCGCTCCCGATGAGGTCGCTGTCTGCAACTTGGCTTCCCTTGCCCTGCCCACCTTCGTT 16637 Query 364321 ------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACT 364374 || |||||| | |||| |||| | ||| | || || || | | | | Sbjct 16636 GACTACAACGATGGTGTCTATGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTT 16577 Query 364375 TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCT 364434 |||| | ||||| | || || || | || || |||| || || | Sbjct 16576 CGCAACTTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCTCGCAATAGC 16517 Query 364435 AATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATG 364494 || |||||||| ||||| |||||||||||||| ||||| || ||||| | ||| | Sbjct 16516 AACATGCGTCACCGCCCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCC 16457 Query 364495 CTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACA 364554 || ||| | || || || ||||| || |||| ||| || ||| |||||||||| || Sbjct 16456 CTTCGCATGCCTTTCGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTTGAGACC 16397 Query 364555 ATGTATTTTGCCGCAATGAC--TGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACT 364612 || || || || |||| || | ||| | | |||| || |||| | |||| Sbjct 16396 ATCTACCACGCTGCTCTGACCATG-TCCGT-TCAGCTGGCCAAGGAGGAGGGCACCTACT 16339 Query 364613 CTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCA 364672 | || || ||||| |||||| | || ||||| | | |||| || | |||||||||| Sbjct 16338 CCACGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCA 16279 Query 364673 CGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACT 364731 ||| |||| | ||| |||||||| | || | | || | ||| |||| ||| Sbjct 16278 AGCCCTCTGATCTTTGGGACTGGGATTCTCTGAAGGAGCAGA-TCAAGGAGCACGGTGTG 16220 Query 364732 CGCAAC---TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 |||||| | |||||| || |||||||| || || || ||| | |||||| | || Sbjct 16219 CGCAACAGTTTGCTCGTT---GCCCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGC 16163 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGA 364848 ||||||||||||||||| || | || ||| | || || || |||||| |||| Sbjct 16162 AACAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCCGGC 16103 Query 364849 GAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT 364908 || || | ||| || || | | | |||||||| |||| || |||||| Sbjct 16102 GAGTTCCAGGTTGTCAACCCCTGGTTGCTGAAGGATCTCGTCGACATGGGCCTGTGGTCC 16043 Query 364909 GACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTT 364968 || |||||||||| ||||||||||| || |||||| | |||||||| || || Sbjct 16042 GATGCCATGAAGAACCGTATCATCGCCGAGAACGGTTCTATTCAGAACATCCCCAACATT 15983 Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028 || | || | ||| || | ||||| || |||||||| || ||| ||| || | | Sbjct 15982 CCCGCTGAGGTCAAGGCTTTGTACAAGACTGTATGGGAGATCTCCCAGCGCACGGTTGTC 15923 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG 365088 | ||||| ||||| || ||||| || ||| ||| |||||| | ||| | |||| Sbjct 15922 CAGATGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTCAACATCCACATG 15863 Query 365089 ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTT 365148 | | || || | |||| | || |||||| ||| ||| ||||| ||||| Sbjct 15862 AAGGACCCGACAATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTC 15803 Query 365149 AAGACAGG 365156 ||||| || Sbjct 15802 AAGACGGG 15795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303309948244148