Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq719 136 4e-27 seq1474 134 1e-26 seq1284 125 7e-24 >seq719 Length=48969 Score = 136 bits (150), Expect = 4e-27 Identities = 707/1114 (63%), Gaps = 37/1114 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||||||||| | ||||||||| || | ||| || ||| |||| Sbjct 16086 TTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGC 16145 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||||| ||| || | || | || || |||||| || || Sbjct 16146 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACG 16205 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || ||||||| ||||||| |||||| | ||||| || | | |||| ||||| Sbjct 16206 AGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAATCCCAGTCCCAA 16265 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| | || | ||||||||||||||| | || |||| | | ||| | Sbjct 16266 AGATCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAG 16325 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT--CCAGAG 145355 || | | | ||| ||||| ||||| |||| ||| | | ||||| Sbjct 16326 CCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCT--GAACGGACATGGTCAGAG 16383 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCA-TCGCTTCATCGCTCTCG 145414 | || || || ||||| || | | ||||||| | || || ||| |||| Sbjct 16384 CAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAG-ATCACGGGCCTCAGGAGACTCG 16442 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 | |||||||| || | |||||||| || || ||||| | || | || ||||| Sbjct 16443 AAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCAATGGGG 16502 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATATCGATTACGGTCGATA 145531 || || ||||||||| | | || |||| | || || | || || || Sbjct 16503 CGGTGACGCATGTTGCTATTGCGAGC---CTCGGGAACGGGGTAGTGGTTGACATCAATG 16559 Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591 || || |||||||| || || || |||| || | | | | ||| | |||||| | Sbjct 16560 ATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCATAG 16619 Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCC 145651 | | |||| | | || || | | ||| | || ||||| || || || || Sbjct 16620 ACACCATCGTTGTAGTCAACGAAGGTGGGCAGGGCAAGGGAAGCCAAGTTGCAGACAGCG 16679 Query 145652 GTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTT 145711 ||| |||| ||| ||| | | |||||| | ||| | ||| | ||||||| Sbjct 16680 ACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTT 16739 Query 145712 CCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCG 145771 ||||| || | ||| || || || | |||| || ||||||||||||||| | || | Sbjct 16740 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTG 16799 Query 145772 CCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828 |||||||| ||| | ||| | ||| | | | || | ||| || | || Sbjct 16800 CCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAGC---TTCTGGGC-----CTTGA 16851 Query 145829 TGCTGGTAGCG------GCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882 | | | ||| |||||| |||||| ||| ||| | |||| ||| | Sbjct 16852 TAGT-CTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCTCGAACTCTTCG 16910 Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942 |||||||| || | || ||| || |||| ||||| ||||| || | ||| || |||| Sbjct 16911 CCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTC 16970 Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCT 146002 | ||| | || ||| |||| ||| || | ||| || ||| | | ||||| || Sbjct 16971 TTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCGCGAGCA 17030 Query 146003 TTGCAATCCTCAGCACCCATGTT-TCGCTTCAAAT-TAAGCACACTATAGATGTCCGCGT 146060 | ||||| || ||| | || ||| | | | || | | ||| || |||| Sbjct 17031 CGGACCTCCTCCTTGCCGTGGTTCTTGC-GCAAGTCCATGAACTCGA-AGACATCGGCGT 17088 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGT 146117 |||| || |||| || | ||||| ||| || || |||||||||||||| |||| Sbjct 17089 GCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGT 17148 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 || | ||||||| ||||| || | |||||| Sbjct 17149 AGCGAGCAGTGTTGTTGAAGACACGAAGCATGGG 17182 >seq1474 Length=13610 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || | ||| | ||| |||||||| ||||||||||| || | Sbjct 6441 CCACCACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGAC 6500 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| || ||||||||||| ||||| Sbjct 6501 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 6560 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | || || | || || | Sbjct 6561 ATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACC 6620 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| || || || || |||||||| |||||||||||||| Sbjct 6621 TCGAGCGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || || || | ||| |||||||| ||||||||||| ||| Sbjct 6669 CCACCGCGAAGACGAAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 6728 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| || |||||||| || |||| |||||||||||||| || || Sbjct 6729 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 6788 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || ||| ||||| | || | |||||| | ||||||| Sbjct 6789 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACC 6848 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| || | ||| || || || || || || |||| Sbjct 6849 TCGAGAGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 6885 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | ||| |||||||| || |||||||||||| Sbjct 6955 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAA 7014 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| | || | |||||||||||| || || Sbjct 7015 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGA 7074 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | ||||||| |||||||| Sbjct 7075 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACC 7134 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 7135 TCGAGGGTGATGGTCTTGCCGGT 7157 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | ||| | ||| |||||||| || ||||| || ||||| Sbjct 6212 GCCGCCACGAAGACGGAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCT 6271 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || ||| || | |||||| || ||| |||| | |||||||||||| ||||| Sbjct 6272 CAGGGTACGACCGTCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 6331 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || || || ||| | | || | || || | ||||||| Sbjct 6332 AATACCCTCCTTATCCTGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGAC 6391 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || | || || ||||| |||||||| Sbjct 6392 TTCCAACGTAATCGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439 >seq1284 Length=15898 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| ||| | Sbjct 6276 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6217 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | ||||||||||| || ||| Sbjct 6216 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 6157 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 6156 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 6097 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || || || || || || || ||||| |||||||||| Sbjct 6096 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGA 6048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471997376981760