Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1802 120 3e-22
>seq1802
Length=45256
Score = 120 bits (132), Expect = 3e-22
Identities = 199/287 (69%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
||||| |||||||| | || || || | ||||| |||| |||||||| || |||
Sbjct 29660 ATGTAGGTATCGATGAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGG 29719
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| |||||||| || | ||| || | || ||| || || || || | ||| |||||
Sbjct 29720 AAGCCGTAGAAGCAGCGAGCCTCGGGGACCTGGACCTCGCCGGAGAAGCGCTCAACGAGG 29779
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
|| || ||||| |||||||| || || || || || || | || || || || |
Sbjct 29780 TTCTCGTTGACGATACCATCCGACGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTAC 29839
Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598
||||||||||| || | | || | ||| ||| ||||| || || ||||| | ||
Sbjct 29840 TTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCC 29899
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
||| | ||||| || || || || || || |||||||| | ||| ||
Sbjct 29900 TCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAGAT 29946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556842604573360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |