Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 125 6e-24
seq1284 114 1e-20
>seq1474
Length=13610
Score = 125 bits (138), Expect = 6e-24
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || || || || || |||||||| | ||| | ||||
Sbjct 7157 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGATACCATCGACAACGTCAAGTCC 7098
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||||||||| ||||| || || ||||| || || || |||||
Sbjct 7097 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCTGGCAAG 7038
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| ||||||| | |||||||||||||| || || || || ||| | ||
Sbjct 7037 CAGCTTGAGGACGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCTACCCTTCAC 6978
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||| | || | || || |||
Sbjct 6977 TTGGTTCTCCGCCTTCGTGGTGGT 6954
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || |||||| | || || || ||| | || || || || ||| | |
Sbjct 6667 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 6608
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | | || || || |||||||||||||||||||| ||||| ||
Sbjct 6607 GACACCATTGACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCAG 6548
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || ||||| || ||| | |||||| ||||| | || || ||||||
Sbjct 6547 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGACTACAAC 6488
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || || || ||| | ||| | || |||| |||| || |||
Sbjct 6487 ATTCAGAAGGAGTCAACCCTGCATCTCGTCCTGCGTCTGCGTGGTGGT 6440
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || ||||||| || || || | | ||||| | ||| || ||||
Sbjct 6871 ACTGGCAAGACCATCACTCTCGAGGTCGAGTCTTCTGATACTATCGACAATGTCAAGTCG 6812
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| || |||||||| ||||| || || || || ||| | || ||||| |||||
Sbjct 6811 AAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATCTTTGCTGGCAAG 6752
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | ||||| ||||||| ||||||| ||||||||||| || || || ||| | ||
Sbjct 6751 CAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 6692
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| || | || | ||||| |||
Sbjct 6691 TTGGTCCTTCGTCTTCGCGGTGGT 6668
>seq1284
Length=15898
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || |||| ||||| ||||| | ||
Sbjct 6050 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 6109
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || || ||||||||||| || || ||||| ||
Sbjct 6110 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6169
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || ||||| || ||| | ||||| ||||||| | ||||| ||||||
Sbjct 6170 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 6229
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || |||||| | || | || |||| |||| || |||
Sbjct 6230 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 6277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419714628252910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |