Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1284 176 8e-39
seq1474 143 5e-29
seq928 122 2e-22
seq1001 87.8 3e-12
seq719 87.8 3e-12
>seq1284
Length=15898
Score = 176 bits (194), Expect = 8e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||| ||| || |||||||| || |||||||| || |||||
Sbjct 6276 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6217
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | || |||||||| ||
Sbjct 6216 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 6157
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 6156 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 6097
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || ||||| |||||||||||||| |||||||| ||
Sbjct 6096 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 6047
>seq1474
Length=13610
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | || | || || || ||||| || ||||||||||| |||
Sbjct 6213 CCGCCACGAAGACGGAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTC 6272
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| |||||||| || ||||| || || | || |||||||| |||
Sbjct 6273 AGGGTACGACCGTCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGA 6332
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || |||||||| | ||| ||| || || ||||| | ||| || |||
Sbjct 6333 ATACCCTCCTTATCCTGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACT 6392
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || || || || | ||||||||||| ||||||||
Sbjct 6393 TCCAACGTAATCGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439
Score = 131 bits (144), Expect = 3e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| || | || || || ||||| || || ||||| || || ||
Sbjct 6441 CCACCACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGAC 6500
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || | |||||| |||||||| || | | || |||||||| |||
Sbjct 6501 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 6560
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||| ||||| | ||| ||| || |||||||||| ||||| ||
Sbjct 6561 ATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACC 6620
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || || || || || || || |||||||| ||||||||
Sbjct 6621 TCGAGCGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667
>seq928
Length=222571
Score = 122 bits (134), Expect = 2e-22
Identities = 246/362 (68%), Gaps = 10/362 (3%)
Strand=Plus/Minus
Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356
|| ||||| || ||||| ||||||||| || || || ||||||| ||||| | |
Sbjct 45354 CCAGTGTGAACATCCTCAGAGAAGCCAATTTCGGCTGTTCCGCCGACCTCGACAAGAGAC 45295
Query 59357 TCTCGGCGGTAGACTGCGCATG--TCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGAG 59414
|| |||||||| | | |||| |||| ||||| | | | | || | ||| ||||
Sbjct 45294 TCACGGCGGTAAA--GAGCATTGCTCCCAACGCAGATTGAGGCTCCCCATCTGTTGCGAT 45237
Query 59415 AAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAG 59474
||||| | || ||| ||||||| |||||| || || ||| | ||||||||||||
Sbjct 45236 TGACCTGCACGACACGATAGAACAATTCCTGAGTGGCACCCGCACCCTGCTCAACCCAAG 45177
Query 59475 TCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCAT 59534
| |||||| || |||| |||| ||| |||| || | || |||| ||||
Sbjct 45176 TTTGGTCGTCAGTGACACGGAAGTACTGAGGGCTCTGAACCAGGGCCGTCTTATCGTC-- 45119
Query 59535 GGGAAAAG---TAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCAT 59591
| ||| | ||| | |||||| | |||||||||| || |||||||| ||||
Sbjct 45118 -GCCCAAGTGCTCAACCATCAATTCCTTAACAAAGTCAGGGCGTGGGCAGAAGTCGGCAT 45060
Query 59592 CGAAGATGGCAAAGAAGGGGGCAGTTGTCTTGGTGAATGCGTTGCGAAGGTTGCCAGCCT 59651
|||| ||||||||||| | | |||| | |||| ||||| ||||||||||
Sbjct 45059 CGAAAATGGCAAAGAACTCTCCGCTGGTCTGCGCAAATGTCCATCGAAGATTGCCAGCCT 45000
Query 59652 TT 59653
||
Sbjct 44999 TT 44998
>seq1001
Length=22730
Score = 87.8 bits (96), Expect = 3e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 195987 TTGATTGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGT 196046
||| ||||||||||||||||||||| ||||||||| ||| | | | ||| ||| |
Sbjct 4307 TTGCTTGGGTCGTCTTTGACGAAATTCACTACATGAGAGACAAGACTAGAGGTGTCGTTT 4248
Query 196047 GGGAAGAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTG 196106
||||||| | | | || || | || |||| |||||| ||||| ||||||| ||
Sbjct 4247 GGGAAGAGACCATCATTCTTCTTCCTGATAAGGTCCGCTACGTCTTCCTGTCCGCCACCA 4188
Query 196107 TTCCCAACGCC 196117
|||||||||||
Sbjct 4187 TTCCCAACGCC 4177
>seq719
Length=48969
Score = 87.8 bits (96), Expect = 3e-12
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 31427 GTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCAT 31486
||| || |||||||||| | | |||||| | |||| | ||| || ||||||||
Sbjct 16391 GTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACGGGCCTCAGGAGACTCGAAAGGCAT 16450
Query 31487 GCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCG 31546
||| || || ||| | || ||||||||||||||| | ||||| ||||| | ||
Sbjct 16451 GCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCAATGGGGCGGTGACG 16510
Query 31547 CATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGACGTCAATGCTCTTGT 31602
|||||| ||| | |||||||||| | |||| |||| |||||| ||||||
Sbjct 16511 CATGTTGCTATTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATGATCTTGT 16566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921592285988080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |