Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1284 176 8e-39 seq1474 143 5e-29 seq928 122 2e-22 seq1001 87.8 3e-12 seq719 87.8 3e-12 >seq1284 Length=15898 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || ||||| Sbjct 6276 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6217 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 6216 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 6157 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 6156 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 6097 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||| |||||||||||||| |||||||| || Sbjct 6096 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 6047 >seq1474 Length=13610 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || ||||| || ||||||||||| ||| Sbjct 6213 CCGCCACGAAGACGGAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTC 6272 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| |||||||| || ||||| || || | || |||||||| ||| Sbjct 6273 AGGGTACGACCGTCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGA 6332 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | ||| ||| || || ||||| | ||| || ||| Sbjct 6333 ATACCCTCCTTATCCTGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACT 6392 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || || | ||||||||||| |||||||| Sbjct 6393 TCCAACGTAATCGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || || || ||||| || || ||||| || || || Sbjct 6441 CCACCACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGAC 6500 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| |||||||| || | | || |||||||| ||| Sbjct 6501 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 6560 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| | ||| ||| || |||||||||| ||||| || Sbjct 6561 ATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACC 6620 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || || || || |||||||| |||||||| Sbjct 6621 TCGAGCGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667 >seq928 Length=222571 Score = 122 bits (134), Expect = 2e-22 Identities = 246/362 (68%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || ||||| || ||||| ||||||||| || || || ||||||| ||||| | | Sbjct 45354 CCAGTGTGAACATCCTCAGAGAAGCCAATTTCGGCTGTTCCGCCGACCTCGACAAGAGAC 45295 Query 59357 TCTCGGCGGTAGACTGCGCATG--TCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGAG 59414 || |||||||| | | |||| |||| ||||| | | | | || | ||| |||| Sbjct 45294 TCACGGCGGTAAA--GAGCATTGCTCCCAACGCAGATTGAGGCTCCCCATCTGTTGCGAT 45237 Query 59415 AAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAG 59474 ||||| | || ||| ||||||| |||||| || || ||| | |||||||||||| Sbjct 45236 TGACCTGCACGACACGATAGAACAATTCCTGAGTGGCACCCGCACCCTGCTCAACCCAAG 45177 Query 59475 TCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCAT 59534 | |||||| || |||| |||| ||| |||| || | || |||| |||| Sbjct 45176 TTTGGTCGTCAGTGACACGGAAGTACTGAGGGCTCTGAACCAGGGCCGTCTTATCGTC-- 45119 Query 59535 GGGAAAAG---TAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCAT 59591 | ||| | ||| | |||||| | |||||||||| || |||||||| |||| Sbjct 45118 -GCCCAAGTGCTCAACCATCAATTCCTTAACAAAGTCAGGGCGTGGGCAGAAGTCGGCAT 45060 Query 59592 CGAAGATGGCAAAGAAGGGGGCAGTTGTCTTGGTGAATGCGTTGCGAAGGTTGCCAGCCT 59651 |||| ||||||||||| | | |||| | |||| ||||| |||||||||| Sbjct 45059 CGAAAATGGCAAAGAACTCTCCGCTGGTCTGCGCAAATGTCCATCGAAGATTGCCAGCCT 45000 Query 59652 TT 59653 || Sbjct 44999 TT 44998 >seq1001 Length=22730 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 195987 TTGATTGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGT 196046 ||| ||||||||||||||||||||| ||||||||| ||| | | | ||| ||| | Sbjct 4307 TTGCTTGGGTCGTCTTTGACGAAATTCACTACATGAGAGACAAGACTAGAGGTGTCGTTT 4248 Query 196047 GGGAAGAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTG 196106 ||||||| | | | || || | || |||| |||||| ||||| ||||||| || Sbjct 4247 GGGAAGAGACCATCATTCTTCTTCCTGATAAGGTCCGCTACGTCTTCCTGTCCGCCACCA 4188 Query 196107 TTCCCAACGCC 196117 ||||||||||| Sbjct 4187 TTCCCAACGCC 4177 >seq719 Length=48969 Score = 87.8 bits (96), Expect = 3e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 31427 GTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCAT 31486 ||| || |||||||||| | | |||||| | |||| | ||| || |||||||| Sbjct 16391 GTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACGGGCCTCAGGAGACTCGAAAGGCAT 16450 Query 31487 GCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCG 31546 ||| || || ||| | || ||||||||||||||| | ||||| ||||| | || Sbjct 16451 GCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCAATGGGGCGGTGACG 16510 Query 31547 CATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGACGTCAATGCTCTTGT 31602 |||||| ||| | |||||||||| | |||| |||| |||||| |||||| Sbjct 16511 CATGTTGCTATTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATGATCTTGT 16566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921592285988080