Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq719 390 2e-103 seq1802 120 6e-22 >seq719 Length=48969 Score = 390 bits (432), Expect = 2e-103 Identities = 1128/1718 (66%), Gaps = 67/1718 (4%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||| | || || || |||| || | ||||||||||||||| |||||| Sbjct 15744 ACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 15803 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || ||| |||| || || ||||||| || | ||| ||| | | || Sbjct 15804 AGACCAAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCAT-------TGTCGG 15856 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||||| || || ||||||||||||| |||||||| ||||| | || || Sbjct 15857 --GTCCTT---CATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCG 15911 Query 243917 GCGGCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 || ||||| || | || | ||| || ||||| | | |||||||| | | ||| Sbjct 15912 GCAGCCATCTGGACAACCGTGCG-CTGGGAGATCTCCCATACAGTCTTGTACAAAGCCTT 15970 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 || | |||| | ||||||||| | || || || | | |||||| || | Sbjct 15971 GACCTCAGCGGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCGATGATACGGTT 16030 Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCT----CGACCAGGTGCCTGT 244091 |||| |||| ||||||||||| | | || ||| | |||||| | | Sbjct 16031 CTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAGCAACCAGGGG----T 16086 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 | || ||||| ||||| || | || || || |||||||||| |||| | || |||| Sbjct 16087 TGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCT 16146 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 ||| || ||| ||||||||| ||||||| ||| ||||| |||||||| | || | Sbjct 16147 CGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACGA 16206 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||| |||||| | ||| |||||| || ||| || || ||| | ||||||||| Sbjct 16207 GCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAA--TCCCAGTCCCA 16264 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | ||||| | | | || ||||||||| |||| || | |||| | Sbjct 16265 AAGATC--AGAGGGCTTGACATT-------CCACATGTCGTACTGAAGGATACCCTGGGA 16315 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC-T 244388 || ||| ||||||||| || | ||||| || || || |||||||| | | | | Sbjct 16316 GATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACGGACAT 16375 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 ||| || || |||| |||||||||||| |||||| ||||||| | || ||||||| | Sbjct 16376 GGTC-AGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACGGGCCT--C 16432 Query 244449 CGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 | || ||| || |||| | | ||| | || || || ||||| || || | Sbjct 16433 AGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAG 16492 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGG-AGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 || ||||| | ||| ||| ||||| | || | || |||| |||||||| |||| Sbjct 16493 ACCAATGGGGCGGTGACGCATGTTGCTATTGCGAGCCT-CGGGAACGGGGTAGTGGTTGA 16551 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 | || || | |||||| | |||||| | | | ||| ||| ||| ||| | Sbjct 16552 CATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGA 16611 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 |||| || | | | ||| | | || | || || | ||||| | | Sbjct 16612 AGTCATAGAC------ACCATCGTTG-TAGTCA-----ACGAAGGTGGGCAGGGCAAGGG 16659 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 |||| ||||||||| || ||||| || | | ||||| | ||||| ||||||| Sbjct 16660 AAGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGA 16719 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 |||| || |||||| ||||||| || || ||| |||| |||| ||| |||| Sbjct 16720 GGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCT 16779 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 |||||||||||||||| || |||||| ||| || | |||| | | ||| || | Sbjct 16780 TGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAGCT 16839 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | ||||||| ||| ||||| |||||||||| ||||| ||||| ||||| Sbjct 16840 TCTGGGCCTTGATAGTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCT 16899 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 ||||||| ||| || || | | ||| |||||| ||||||||||| ||| Sbjct 16900 CGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCC 16959 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | ||| || | || ||| |||| |||||| || |||||||||||||| || |||| | Sbjct 16960 AGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAA 17019 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | | | ||| ||| ||| |||||| | || |||| || || |||| Sbjct 17020 GATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGA 17079 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | ||| ||||||||||||| | ||| | |||| ||| || || ||||||||||| |||| Sbjct 17080 CATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCT 17139 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | | | ||||| |||||||| || || | || | | ||||| Sbjct 17140 GGTCGA----CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTC 17195 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACA 245279 || ||||||||||| ||||||| ||| | | | | | | || | || | Sbjct 17196 GATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGA 17255 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || ||||||||| | ||||||| |||||| |||||| || | Sbjct 17256 --CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATAC 17313 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 |||| || ||| |||||||| || || ||||| || ||||||||| || ||| Sbjct 17314 CCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGG 17373 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | | | |||||| || |||||| ||||||||| ||| Sbjct 17374 TACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAG 17411 >seq1802 Length=45256 Score = 120 bits (132), Expect = 6e-22 Identities = 227/332 (68%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||||||||| || Sbjct 29946 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 29887 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCTGAGA--ACGAAAAGTTTTTCCTCAAA 42416 ||||||| || |||| | || || || | || |||| ||| || Sbjct 29886 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 29827 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 |||| || |||||||||||||| || || || || ||||| |||||||| | | Sbjct 29826 CACATTCTTGCCTTCTTCGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCGC 29767 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 ||| ||||| ||| | ||||| ||||||||||||||||||||||| || Sbjct 29766 TTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 29707 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||||||| ||| || || || | || |||||| ||| || | Sbjct 29706 GAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGAACCTGCG 29647 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 |||| | | || ||||| ||||| || || Sbjct 29646 CAGCGCACCTACCTCTTCAACGCCATTGATAC 29615 Score = 109 bits (120), Expect = 1e-18 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 || |||||| || ||||| |||| ||| | |||||||| || || | |||||| Sbjct 28889 GGACATCATTGTTGATGCCGTCAAGATTGAGCAAGAGTTCCTGACTGAGGCTCTGCCCTG 28830 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024 | || ||||||||||| | || | ||| |||||||| ||| ||| || |||| Sbjct 28829 CGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATCGAGTTCGTTGCTGACCG 28770 Query 43025 TCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTAT 43084 || ||| | | || | | ||||||| | | |||||||||||| || Sbjct 28769 CCTTCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCAT 28710 Query 43085 GGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 |||||||||||| | | |||||||||||||| || |||||||| |||||||| ||||| Sbjct 28709 GGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGATTACCA 28650 Score = 107 bits (118), Expect = 4e-18 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTT 42802 || || || ||||||||||||||||||||| || ||| || |||||||| || ||||| Sbjct 29242 GGTGCTTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCCGGTCTGACCTT 29184 Query 42803 CTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862 ||| ||||| |||||| | | || ||||| ||||| | ||||||||||||||| ||| Sbjct 29183 CTCCAACGAGCTCATCTCCCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGTA 29124 Query 42863 CTC 42865 ||| Sbjct 29123 CTC 29121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944308343716640