Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq719 390 2e-103
seq1802 120 6e-22
>seq719
Length=48969
Score = 390 bits (432), Expect = 2e-103
Identities = 1128/1718 (66%), Gaps = 67/1718 (4%)
Strand=Plus/Plus
Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796
||| ||||||| | || || || |||| || | ||||||||||||||| ||||||
Sbjct 15744 ACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 15803
Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856
|| ||| |||| || || ||||||| || | ||| ||| | | ||
Sbjct 15804 AGACCAAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCAT-------TGTCGG 15856
Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916
||||| || || ||||||||||||| |||||||| ||||| | || ||
Sbjct 15857 --GTCCTT---CATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCG 15911
Query 243917 GCGGCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975
|| ||||| || | || | ||| || ||||| | | |||||||| | | |||
Sbjct 15912 GCAGCCATCTGGACAACCGTGCG-CTGGGAGATCTCCCATACAGTCTTGTACAAAGCCTT 15970
Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035
|| | |||| | ||||||||| | || || || | | |||||| || |
Sbjct 15971 GACCTCAGCGGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCGATGATACGGTT 16030
Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCT----CGACCAGGTGCCTGT 244091
|||| |||| ||||||||||| | | || ||| | |||||| | |
Sbjct 16031 CTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAGCAACCAGGGG----T 16086
Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151
| || ||||| ||||| || | || || || |||||||||| |||| | || ||||
Sbjct 16087 TGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCT 16146
Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211
||| || ||| ||||||||| ||||||| ||| ||||| |||||||| | || |
Sbjct 16147 CGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACGA 16206
Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCCCA 244269
||| |||||| | ||| |||||| || ||| || || ||| | |||||||||
Sbjct 16207 GCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAA--TCCCAGTCCCA 16264
Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329
| | ||||| | | | || ||||||||| |||| || | |||| |
Sbjct 16265 AAGATC--AGAGGGCTTGACATT-------CCACATGTCGTACTGAAGGATACCCTGGGA 16315
Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC-T 244388
|| ||| ||||||||| || | ||||| || || || |||||||| | | | |
Sbjct 16316 GATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACGGACAT 16375
Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448
||| || || |||| |||||||||||| |||||| ||||||| | || ||||||| |
Sbjct 16376 GGTC-AGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACGGGCCT--C 16432
Query 244449 CGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506
| || ||| || |||| | | ||| | || || || ||||| || || |
Sbjct 16433 AGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAG 16492
Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGG-AGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565
|| ||||| | ||| ||| ||||| | || | || |||| |||||||| ||||
Sbjct 16493 ACCAATGGGGCGGTGACGCATGTTGCTATTGCGAGCCT-CGGGAACGGGGTAGTGGTTGA 16551
Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625
| || || | |||||| | |||||| | | | ||| ||| ||| ||| |
Sbjct 16552 CATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGA 16611
Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685
|||| || | | | ||| | | || | || || | ||||| | |
Sbjct 16612 AGTCATAGAC------ACCATCGTTG-TAGTCA-----ACGAAGGTGGGCAGGGCAAGGG 16659
Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745
|||| ||||||||| || ||||| || | | ||||| | ||||| |||||||
Sbjct 16660 AAGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGA 16719
Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805
|||| || |||||| ||||||| || || ||| |||| |||| ||| ||||
Sbjct 16720 GGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCT 16779
Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865
|||||||||||||||| || |||||| ||| || | |||| | | ||| || |
Sbjct 16780 TGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAGCT 16839
Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925
| ||||||| ||| ||||| |||||||||| ||||| ||||| |||||
Sbjct 16840 TCTGGGCCTTGATAGTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCT 16899
Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985
||||||| ||| || || | | ||| |||||| ||||||||||| |||
Sbjct 16900 CGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCC 16959
Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045
| ||| || | || ||| |||| |||||| || |||||||||||||| || |||| |
Sbjct 16960 AGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAA 17019
Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105
| || | | | ||| ||| ||| |||||| | || |||| || || ||||
Sbjct 17020 GATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGA 17079
Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165
| ||| ||||||||||||| | ||| | |||| ||| || || ||||||||||| ||||
Sbjct 17080 CATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCT 17139
Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221
|||| | | | ||||| |||||||| || || | || | | |||||
Sbjct 17140 GGTCGA----CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTC 17195
Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACA 245279
|| ||||||||||| ||||||| ||| | | | | | | || | || |
Sbjct 17196 GATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGA 17255
Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339
|| | || || || ||||||||| | ||||||| |||||| |||||| || |
Sbjct 17256 --CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATAC 17313
Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399
|||| || ||| |||||||| || || ||||| || ||||||||| || |||
Sbjct 17314 CCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGG 17373
Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437
| | | |||||| || |||||| ||||||||| |||
Sbjct 17374 TACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAG 17411
>seq1802
Length=45256
Score = 120 bits (132), Expect = 6e-22
Identities = 227/332 (68%), Gaps = 3/332 (1%)
Strand=Plus/Minus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||||| || ||| ||||||||||||||||||||| ||
Sbjct 29946 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 29887
Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCTGAGA--ACGAAAAGTTTTTCCTCAAA 42416
||||||| || |||| | || || || | || |||| ||| ||
Sbjct 29886 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 29827
Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476
|||| || |||||||||||||| || || || || ||||| |||||||| | |
Sbjct 29826 CACATTCTTGCCTTCTTCGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCGC 29767
Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536
||| ||||| ||| | ||||| ||||||||||||||||||||||| ||
Sbjct 29766 TTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 29707
Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596
|||||| | ||||||||| ||| || || || | || |||||| ||| || |
Sbjct 29706 GAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGAACCTGCG 29647
Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628
|||| | | || ||||| ||||| || ||
Sbjct 29646 CAGCGCACCTACCTCTTCAACGCCATTGATAC 29615
Score = 109 bits (120), Expect = 1e-18
Identities = 168/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964
|| |||||| || ||||| |||| ||| | |||||||| || || | ||||||
Sbjct 28889 GGACATCATTGTTGATGCCGTCAAGATTGAGCAAGAGTTCCTGACTGAGGCTCTGCCCTG 28830
Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024
| || ||||||||||| | || | ||| |||||||| ||| ||| || ||||
Sbjct 28829 CGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATCGAGTTCGTTGCTGACCG 28770
Query 43025 TCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTAT 43084
|| ||| | | || | | ||||||| | | |||||||||||| ||
Sbjct 28769 CCTTCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCAT 28710
Query 43085 GGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
|||||||||||| | | |||||||||||||| || |||||||| |||||||| |||||
Sbjct 28709 GGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGATTACCA 28650
Score = 107 bits (118), Expect = 4e-18
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTT 42802
|| || || ||||||||||||||||||||| || ||| || |||||||| || |||||
Sbjct 29242 GGTGCTTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCCGGTCTGACCTT 29184
Query 42803 CTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862
||| ||||| |||||| | | || ||||| ||||| | ||||||||||||||| |||
Sbjct 29183 CTCCAACGAGCTCATCTCCCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTCTTGTA 29124
Query 42863 CTC 42865
|||
Sbjct 29123 CTC 29121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944308343716640
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