Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq719 307 1e-78 >seq719 Length=48969 Score = 307 bits (340), Expect = 1e-78 Identities = 1112/1718 (65%), Gaps = 40/1718 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || |||||| || ||||| || ||| | || ||| Sbjct 17578 AACTACCAATACTTCGGCTTCAAGACCTTGGAGAGATCATACCTGCTTAAGCTTGACGGC 17519 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| |||| || || || | ||||| || || |||| || || | Sbjct 17518 AAGATTGCCGAGAGACCTCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGAT 17459 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | ||| | | | | || |||| |||| | ||| ||| Sbjct 17458 AACGTCGAGCGTGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCC 17399 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCG--GTGCCACAGATGTCTTCGTGTTTCCTGA 93952 |||| || || |||||||| || ||||| |||||| | ||||||| || ||||| Sbjct 17398 TCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCA--GCTGTCTTCATGCTTCCTCG 17341 Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| | |||| ||||| || || |||| ||||| ||||||| ||| || | Sbjct 17340 TCGAC-ATGAAGGAAGACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCGCCATG 17282 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069 ||||| || || || || || || ||| | ||| |||| ||||| | || | Sbjct 17281 ATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTCAC--CGTATCCGTGCTACTGGCT 17224 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 ||||||| ||| ||||| || || || ||||| || | || ||||| || ||||||| Sbjct 17223 CCTACATTGCCGGCACCAACGGTACATCGAACGGTGTCATTCCCATGCTTCGTGTCTTCA 17164 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| | || |||||||| ||||||||||| | | | ||| | ||||| | | Sbjct 17163 ACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATTT 17104 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || |||||||||||||| || || | ||||| ||| |||| ||||||||||||| Sbjct 17103 ACCTTGAGCCCTGGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCA 17044 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || || | || | || || ||| |||||||||| | || || || || |||| Sbjct 17043 AGGAGGAGGTCCGTGCTCGCGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGA 16984 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | | |||||||| ||| ||| ||||| || | || |||||||| || || || || Sbjct 16983 AGAGAGTCGAGAAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGG 16924 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428 | ||| | || || || | |||||| | |||||| ||| |||||||| Sbjct 16923 CTGACTGCTACGGCGAAGAGTTCGAGGCCTTGTACGAGAAGTACGAA-CGCGAGGGCAAG 16865 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | ||| ||| | || |||||| ||| || ||| | || | ||| ||| Sbjct 16864 GGTCGCAAGACTATCAAGGCCCAGAAGCTTTGGTATGCCATCCTTGAGGCTCAGACCGAG 16805 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || | |||| ||| | | |||||| | | |||| |||| ||||||| || || Sbjct 16804 ACTGGCAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAAC 16745 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || ||| ||||| || || ||||| ||||| | ||||| |||| || Sbjct 16744 CTGGGAACCATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCTCCCGAT 16685 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| | ||||| || ||| ||| ||| | |||| |||| ||||| || |||| Sbjct 16684 GAGGTCGCTGTCTGCAACTTGGCTTCCCTTGCCCTGCCCACCTTCGT------TGACTAC 16631 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT- 94727 | | | || | | || | || ||||| | || | ||| | | || Sbjct 16630 A--ACGA-TGGTGTCTATGACTTCCAGAAGCTTCACGAGGTCAC--TCAGGTCGTTGTTC 16576 Query 94728 -GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 ||| |||||| | | || || ||| ||||||||| || ||||| || | Sbjct 16575 GCAACTTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCTCGCAATAGCA 16516 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || || || || ||||| || | || ||||||||| | || || || | | Sbjct 16515 ACATGCGTCACCGCCCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCC 16456 Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 | || |||| | ||| ||| || || | | | || ||| || || || | || Sbjct 16455 TTCGCATGCCTTTCGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTTGAGACCA 16396 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966 | || ||| || ||| ||||| || |||||| ||| ||| | || | Sbjct 16395 TCTACCACGCTGCTCTGACCATGTCCGTTCAGCTGGCCAAGGAGGAGGGC-ACCTACTCC 16337 Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 | ||| | || || || | ||||| || |||||| |||| | ||| ||| | Sbjct 16336 A--CGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCA 16279 Query 95027 AGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGT 95084 ||||||| | ||| | |||||||| |||| | | || || | | | |||||||| Sbjct 16278 AGCCCTCTGATCTTTGGGACTGGGATTCTCTGAAGGAGCAGA--TCAAGGAGCACGGTGT 16221 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 | ||| |||| || ||||||||||| || |||||||| |||||||| | ||||| Sbjct 16220 GCGCAACAGTTTGCTCGTTGCCCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAA 16161 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 |||||||| ||||| |||| |||||||||| | ||| | | || || || ||||| || Sbjct 16160 CAACGAGTGCTTCGAGCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCCGGCGA 16101 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGG---G 95260 |||| || ||||| | || ||| || | || | |||| ||||| | Sbjct 16100 GTTCCAGGTTGTCAACCCCTGGTTGCTGAAGGATCTCGTCGAC-ATGGGCCTGTGGTCCG 16042 Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAA 95320 || || | ||||||| | | || ||||| || | ||||||||||| | | Sbjct 16041 ATGCCA---TGAAGAACCGTATCATCGCCGAGAACGGTTCTATTCAGAACATCCCCAACA 15985 Query 95321 TACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATAC 95380 | || | || ||||||| | |||||||| || ||||||||| | |||||| | | Sbjct 15984 TTCCCGCTGAGGTCAAGGCTTTGTACAAGACTGTATGGGAGATCTCCCAGCGCACGGTTG 15925 Query 95381 TCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 || | || |||| ||| || |||||||| |||| Sbjct 15924 TCCAGATGGCTGCCGACCGTGGTGCCTTCATCGACCAG 15887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494707034919440