Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1474 138 1e-27 seq1284 118 1e-21 seq719 107 2e-18 >seq1474 Length=13610 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | || ||||| || ||||| ||||| || | Sbjct 6441 CCACCACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGAC 6500 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| ||||| ||| ||||||| |||||||| |||||||| Sbjct 6501 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 6560 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| ||| ||| | |||| || | |||||| | | || || Sbjct 6561 ATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTG-TCAATGGTGTCTGAAGATTCAAC 6619 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| || |||||||| || ||||||||||| Sbjct 6620 CTCGAGCGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | |||||||| || ||||| ||||| ||| Sbjct 6669 CCACCGCGAAGACGAAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 6728 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || || ||||| ||||||| |||||||| || || || Sbjct 6729 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 6788 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| || ||| ||||| | |||| || || | | |||||| Sbjct 6789 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACC 6848 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| || | || ||||| || || || || || Sbjct 6849 TCGAGAGTGATGGTCTTGCCAGTGAGCGTCTTGAC 6883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||||||| Sbjct 6955 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAA 7014 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || |||||| | || | |||||||| ||||| || Sbjct 7015 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGA 7074 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||||| |||| |||| ||| || | |||||| Sbjct 7075 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTATCGGAGGACTCGAC 7133 Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089 |||| ||| | || |||||||| Sbjct 7134 CTCGAGGGTGATGGTCTTGCCGGT 7157 >seq1284 Length=15898 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| || | || ||||| || || || ||||| ||| | Sbjct 6276 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6217 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| |||||| |||||||| ||||| || Sbjct 6216 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 6157 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 6156 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 6097 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || ||||| ||||| || || || || ||||||||| Sbjct 6096 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 6049 >seq719 Length=48969 Score = 107 bits (118), Expect = 2e-18 Identities = 709/1121 (63%), Gaps = 46/1121 (4%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| ||||| ||||||||||| ||||| || | | | || | |||| |||| | | Sbjct 16084 GGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGG 16143 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 ||||||| |||||||||| || | ||||||| || | || ||||||||| || | Sbjct 16144 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAA 16203 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAATCTTTTCCCGTAGTTTGGA-CCAATT 146240 | |||||| ||| | ||| ||||| || ||| |||| ||| || | | || | | Sbjct 16204 CGAGCAAACTGTTGCGCACACCGTGCTCCTTG-ATCTGCTCCTTCAG--AGAATCCCAGT 16260 Query 146241 CCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAG 146300 || |||| |||| | ||| | || ||| | ||||||| || | | || || | | Sbjct 16261 CC-CAAA-GATCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGAT 16318 Query 146301 GGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTT---CGCAGCTAGC 146357 ||| |||||||| || | || || ||||||||| | || | | | Sbjct 16319 AGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACGGACATGG- 16377 Query 146358 TTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTC-CTGGCCTCCT 146416 |||||| | ||| |||||||| |||| | | ||||| | || | |||||| Sbjct 16378 --TCAGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGA-GATCACGGGCCTCAG 16434 Query 146417 CGCTGTCGTAGGGGATATCGAGAAGC-ACAAAGGCGTCGGCGAGACCCTGTATCCCGACA 146475 ||| | || || ||| || | || || || || |||||||| | || | | Sbjct 16435 GAGACTCGAAAGGCAT-GCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGA 16493 Query 146476 CCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTG 146535 |||| ||||||||| | |||| || || ||| | | | ||| ||||||||| Sbjct 16494 CCAATGGGGCGGTGACGCATGTTGCTATTGCGAGCCTCGGGAACGGGGTAGTGGTTGACA 16553 Query 146536 TCGATGATCTTGTTGAGATTACGCACGACAATTT--------TCGTCAAACGATTCAGCA 146587 || ||||||||||| | || || || || | | |||| || | ||| | | Sbjct 16554 TCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAA--GCTTCTGGA 16611 Query 146588 GGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCA 146647 | ||||| || | ||| || || ||| | || | ||| | || |||| Sbjct 16612 AGTCATAGACA----CCATCGTTGTA--GTCAACGAAGGTGGGCAGGGCAAGGGAAGCCA 16665 Query 146648 AGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGC 146707 |||| || || || ||| || |||| |||| | ||||| | |||||||||| Sbjct 16666 AGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGG 16725 Query 146708 TGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTTGCAGGGGTCCTTGT 146764 || |||| | |||| || || ||||| || ||| |||| || ||||||| Sbjct 16726 AGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCT---CTTGCGGTTGGCGGCATCCTTGT 16782 Query 146765 AGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATC-T 146823 |||||||| | || || || ||| | | ||| | |||| | | |||| | | Sbjct 16783 AGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATG--GCATACCAAAGCTT 16840 Query 146824 CTGGCCTTTACTTGTCTTTCGTACAGTTTATTC-TTTTCGTATTTCTCGTACAATATTTC 146882 |||| | || | ||||| || | | || |||||| ||||||||||| || Sbjct 16841 CTGGGCCTTGATAGTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCTC 16900 Query 146883 AAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCA 146942 || ||||| ||| | ||| || ||| ||||| || | || | ||| Sbjct 16901 GAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCCA 16960 Query 146943 TTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAA 147002 || |||| || || | | ||| |||| |||||| ||||| || | || | | Sbjct 16961 GTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAG 17020 Query 147003 GTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAAT 147062 |||||||| | | ||||| ||| ||| | ||||| | || ||| | | Sbjct 17021 ATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGAC 17080 Query 147063 TTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTG 147119 || | ||||| ||||| | ||| ||||| || || ||| || || ||||| Sbjct 17081 ATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTG 17140 Query 147120 ATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGG 147160 ||||||| ||| | |||| |||||||| || | ||||| Sbjct 17141 GTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGG 17181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485263011360