Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 138 1e-27
seq1284 118 1e-21
seq719 107 2e-18
>seq1474
Length=13610
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| || | ||| | || ||||| || ||||| ||||| || |
Sbjct 6441 CCACCACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGAC 6500
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || ||||| ||||| ||| ||||||| |||||||| ||||||||
Sbjct 6501 AAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 6560
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| ||||||||||| ||| ||| ||| | |||| || | |||||| | | || ||
Sbjct 6561 ATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTG-TCAATGGTGTCTGAAGATTCAAC 6619
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | ||| ||||| || |||||||| || |||||||||||
Sbjct 6620 CTCGAGCGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | |||||||| || ||||| ||||| |||
Sbjct 6669 CCACCGCGAAGACGAAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 6728
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || || || || ||||| ||||||| |||||||| || || ||
Sbjct 6729 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 6788
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||| ||| || ||| ||||| | |||| || || | | ||||||
Sbjct 6789 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACC 6848
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|||| || | || ||||| || || || || ||
Sbjct 6849 TCGAGAGTGATGGTCTTGCCAGTGAGCGTCTTGAC 6883
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | |||||||| || || || |||||||||
Sbjct 6955 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAA 7014
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || |||||| | || | |||||||| ||||| ||
Sbjct 7015 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGA 7074
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || || ||||| |||| |||| ||| || | ||||||
Sbjct 7075 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTATCGGAGGACTCGAC 7133
Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089
|||| ||| | || ||||||||
Sbjct 7134 CTCGAGGGTGATGGTCTTGCCGGT 7157
>seq1284
Length=15898
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||| || | || ||||| || || || ||||| ||| |
Sbjct 6276 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6217
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| ||||| ||| |||||| |||||||| ||||| ||
Sbjct 6216 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 6157
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | ||| ||
Sbjct 6156 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 6097
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || ||||| ||||| || || || || |||||||||
Sbjct 6096 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 6049
>seq719
Length=48969
Score = 107 bits (118), Expect = 2e-18
Identities = 709/1121 (63%), Gaps = 46/1121 (4%)
Strand=Plus/Plus
Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122
||||||| ||||| ||||||||||| ||||| || | | | || | |||| |||| | |
Sbjct 16084 GGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGG 16143
Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182
||||||| |||||||||| || | ||||||| || | || ||||||||| || |
Sbjct 16144 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAA 16203
Query 146183 CCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAATCTTTTCCCGTAGTTTGGA-CCAATT 146240
| |||||| ||| | ||| ||||| || ||| |||| ||| || | | || | |
Sbjct 16204 CGAGCAAACTGTTGCGCACACCGTGCTCCTTG-ATCTGCTCCTTCAG--AGAATCCCAGT 16260
Query 146241 CCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAG 146300
|| |||| |||| | ||| | || ||| | ||||||| || | | || || | |
Sbjct 16261 CC-CAAA-GATCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGAT 16318
Query 146301 GGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTT---CGCAGCTAGC 146357
||| |||||||| || | || || ||||||||| | || | | |
Sbjct 16319 AGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACGGACATGG- 16377
Query 146358 TTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTC-CTGGCCTCCT 146416
|||||| | ||| |||||||| |||| | | ||||| | || | ||||||
Sbjct 16378 --TCAGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGA-GATCACGGGCCTCAG 16434
Query 146417 CGCTGTCGTAGGGGATATCGAGAAGC-ACAAAGGCGTCGGCGAGACCCTGTATCCCGACA 146475
||| | || || ||| || | || || || || |||||||| | || | |
Sbjct 16435 GAGACTCGAAAGGCAT-GCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGA 16493
Query 146476 CCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTG 146535
|||| ||||||||| | |||| || || ||| | | | ||| |||||||||
Sbjct 16494 CCAATGGGGCGGTGACGCATGTTGCTATTGCGAGCCTCGGGAACGGGGTAGTGGTTGACA 16553
Query 146536 TCGATGATCTTGTTGAGATTACGCACGACAATTT--------TCGTCAAACGATTCAGCA 146587
|| ||||||||||| | || || || || | | |||| || | ||| | |
Sbjct 16554 TCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAA--GCTTCTGGA 16611
Query 146588 GGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCA 146647
| ||||| || | ||| || || ||| | || | ||| | || ||||
Sbjct 16612 AGTCATAGACA----CCATCGTTGTA--GTCAACGAAGGTGGGCAGGGCAAGGGAAGCCA 16665
Query 146648 AGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGC 146707
|||| || || || ||| || |||| |||| | ||||| | ||||||||||
Sbjct 16666 AGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGG 16725
Query 146708 TGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTTGCAGGGGTCCTTGT 146764
|| |||| | |||| || || ||||| || ||| |||| || |||||||
Sbjct 16726 AGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCT---CTTGCGGTTGGCGGCATCCTTGT 16782
Query 146765 AGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATC-T 146823
|||||||| | || || || ||| | | ||| | |||| | | |||| | |
Sbjct 16783 AGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATG--GCATACCAAAGCTT 16840
Query 146824 CTGGCCTTTACTTGTCTTTCGTACAGTTTATTC-TTTTCGTATTTCTCGTACAATATTTC 146882
|||| | || | ||||| || | | || |||||| ||||||||||| ||
Sbjct 16841 CTGGGCCTTGATAGTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCTC 16900
Query 146883 AAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCA 146942
|| ||||| ||| | ||| || ||| ||||| || | || | |||
Sbjct 16901 GAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCCA 16960
Query 146943 TTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAA 147002
|| |||| || || | | ||| |||| |||||| ||||| || | || | |
Sbjct 16961 GTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAG 17020
Query 147003 GTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAAT 147062
|||||||| | | ||||| ||| ||| | ||||| | || ||| | |
Sbjct 17021 ATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGAC 17080
Query 147063 TTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTG 147119
|| | ||||| ||||| | ||| ||||| || || ||| || || |||||
Sbjct 17081 ATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTG 17140
Query 147120 ATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGG 147160
||||||| ||| | |||| |||||||| || | |||||
Sbjct 17141 GTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGG 17181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475485263011360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |