Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 111 1e-19
>seq1474
Length=13610
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| |||||||| ||||| ||||| ||||| ||||| ||||| | ||| | || |||
Sbjct 6231 ACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTACGACCGTCTTCC 6290
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
|| || ||||| ||| | || | || |||||||| || ||||| || || ||||| |||
Sbjct 6291 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGA 6350
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| || || | || | || | ||||| || ||||||||||| | |||| ||| ||
Sbjct 6351 ATCTTGGACTTCA-CGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTT 6409
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || | || || || || || |||||
Sbjct 6410 GCCAGTCAACGTCTTGACGAAGATCTGCAT 6439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451988430795440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |