Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq719 147 3e-30 seq1802 109 9e-19 >seq719 Length=48969 Score = 147 bits (162), Expect = 3e-30 Identities = 457/686 (67%), Gaps = 21/686 (3%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTAC 203893 ||||| || || ||||||||||| | | | | || |||||| | | ||| |||||| Sbjct 15735 TCTTGGTCGACGGTGAACTGAATAGGGG---CAGAAGCTGCCTGCGTACGCAGGTAGTAC 15791 Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953 ||||| ||||| || || || ||| ||| | ||||||| | | |||| || Sbjct 15792 ATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATT 15851 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012 | ||||| |||||| ||||| || |||||| ||||||||||| ||| || || || Sbjct 15852 GTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAA-GGCACCACGGTC 15910 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| | || || || ||| || |||||||| || |||||| ||| | | Sbjct 15911 GGCAGCCATCTGGACAACCGTGCGCTGGGAGATCTCCCATACAGTCTTGTACAAAGCCTT 15970 Query 204073 GGTGTGTTGAGGCACATCTTCCC-ACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTC 204130 | | | || | || || | || |||| | || ||||| ||||| || | | Sbjct 15971 GACCTCA-GCGGGA-ATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCGATGATACGG 16028 Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 || || | | || ||||| ||||| || || ||| || || ||||||| Sbjct 16029 TTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAGCAACCAGGGGTTG 16088 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | | ||| || || |||| || || | || | | | |||| |||| | || ||| Sbjct 16089 ACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCG 16148 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 || |||||||||||| || ||||| | ||| ||| || |||||||| || | |||| Sbjct 16149 AAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACGAGC 16208 Query 204311 AGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCAT 204369 | |||||||||||||| | | || |||| ||||||||| |||||| | Sbjct 16209 AAACTGTTGCGCACACCGTGCTCCTTGA-TCTGCTCCTTCAGAGAATCCCAGTCCCAAAG 16267 Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429 || ||| || || |||||||||| |||||| ||| || || || ||| ||| Sbjct 16268 ATCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAGCC 16327 Query 204430 CTTGTACGTCGGATAAGGCTG--ATCCTCTTCTGCCAGCTTGCAC-GAGGCGGCCATGGC 204486 || |||||| ||| ||| || ||||| | |||||| || || || || || || Sbjct 16328 CTCGTACGT-GGAGTAGG-TGCCCTCCTCCTTGGCCAGC-TGAACGGACATGGTCAGAGC 16384 Query 204487 GTGATAGTACATGGTCTCAAAGATCT 204512 | ||| |||||||||||||||| Sbjct 16385 AGCGTGGTAGATGGTCTCAAAGATCT 16410 >seq1802 Length=45256 Score = 109 bits (120), Expect = 9e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 ||| |||||| ||||||||| |||||| ||||| || || ||||||| ||||||||| | Sbjct 29125 ACAAGAGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTGGAGA 29184 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | | || || ||||||| |||||| |||||||| || |||| ||||||||||||| Sbjct 29185 AGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGC 29244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795129218303840