Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq719 147 3e-30
seq1802 109 9e-19
>seq719
Length=48969
Score = 147 bits (162), Expect = 3e-30
Identities = 457/686 (67%), Gaps = 21/686 (3%)
Strand=Plus/Plus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTAC 203893
||||| || || ||||||||||| | | | | || |||||| | | ||| ||||||
Sbjct 15735 TCTTGGTCGACGGTGAACTGAATAGGGG---CAGAAGCTGCCTGCGTACGCAGGTAGTAC 15791
Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953
||||| ||||| || || || ||| ||| | ||||||| | | |||| ||
Sbjct 15792 ATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATT 15851
Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012
| ||||| |||||| ||||| || |||||| ||||||||||| ||| || || ||
Sbjct 15852 GTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAA-GGCACCACGGTC 15910
Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072
|| ||||| | || || || ||| || |||||||| || |||||| ||| | |
Sbjct 15911 GGCAGCCATCTGGACAACCGTGCGCTGGGAGATCTCCCATACAGTCTTGTACAAAGCCTT 15970
Query 204073 GGTGTGTTGAGGCACATCTTCCC-ACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTC 204130
| | | || | || || | || |||| | || ||||| ||||| || | |
Sbjct 15971 GACCTCA-GCGGGA-ATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCGATGATACGG 16028
Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190
|| || | | || ||||| ||||| || || ||| || || |||||||
Sbjct 16029 TTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAGCAACCAGGGGTTG 16088
Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250
| | ||| || || |||| || || | || | | | |||| |||| | || |||
Sbjct 16089 ACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCG 16148
Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310
|| |||||||||||| || ||||| | ||| ||| || |||||||| || | ||||
Sbjct 16149 AAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACGAGC 16208
Query 204311 AGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCAT 204369
| |||||||||||||| | | || |||| ||||||||| |||||| |
Sbjct 16209 AAACTGTTGCGCACACCGTGCTCCTTGA-TCTGCTCCTTCAGAGAATCCCAGTCCCAAAG 16267
Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429
|| ||| || || |||||||||| |||||| ||| || || || ||| |||
Sbjct 16268 ATCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAGCC 16327
Query 204430 CTTGTACGTCGGATAAGGCTG--ATCCTCTTCTGCCAGCTTGCAC-GAGGCGGCCATGGC 204486
|| |||||| ||| ||| || ||||| | |||||| || || || || || ||
Sbjct 16328 CTCGTACGT-GGAGTAGG-TGCCCTCCTCCTTGGCCAGC-TGAACGGACATGGTCAGAGC 16384
Query 204487 GTGATAGTACATGGTCTCAAAGATCT 204512
| ||| ||||||||||||||||
Sbjct 16385 AGCGTGGTAGATGGTCTCAAAGATCT 16410
>seq1802
Length=45256
Score = 109 bits (120), Expect = 9e-19
Identities = 96/120 (80%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974
||| |||||| ||||||||| |||||| ||||| || || ||||||| ||||||||| |
Sbjct 29125 ACAAGAGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTGGAGA 29184
Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034
| | || || ||||||| |||||| |||||||| || |||| |||||||||||||
Sbjct 29185 AGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCAAAAGCACCGC 29244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795129218303840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |