Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1284 158 1e-33
seq1474 127 2e-24
>seq1284
Length=15898
Score = 158 bits (174), Expect = 1e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | || |||||| ||||| ||||||||||| || ||||| ||
Sbjct 6264 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 6205
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||| |||||||| |||| |||||||||||||| || | || |||||||
Sbjct 6204 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 6145
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | |||||| ||| ||||| || | |||||
Sbjct 6144 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 6085
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||||||||| || || || ||||| |||||
Sbjct 6084 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 6050
>seq1474
Length=13610
Score = 127 bits (140), Expect = 2e-24
Identities = 160/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| || ||||||| || |||||| || || |||||||| || | |||||| |
Sbjct 6452 ACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGTGCGACC 6511
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||| |||||||| ||||||||||||||||||| || | | ||||||
Sbjct 6512 ATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTT 6571
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
||| ||||||| ||| | ||| | | | ||||| ||||| || || | ||| |
Sbjct 6572 GTCTTGGATCTTCGACTT-AACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAA 6630
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || ||||| || || ||||| || || || |||||
Sbjct 6631 TCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667
Score = 100 bits (110), Expect = 3e-16
Identities = 130/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||||||||| || ||||| |||| || || |||||||| || ||
Sbjct 6704 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCAAA 6763
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||| | || | || |||||| ||| |||||| ||||| |
Sbjct 6764 GATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGAATCTTCGACTTGACATT 6823
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || || || || || || | |||||||| ||||| || ||||| || ||
Sbjct 6824 GTCGATAGTATCAGAAGACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGCGTCTTGAC 6883
Score = 100 bits (110), Expect = 3e-16
Identities = 125/169 (74%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || ||||| |||| || ||||||||||| |||||
Sbjct 6990 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 7049
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||||| || | | |||||||||| ||||| ||||| |||
Sbjct 7050 AATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 7108
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | || ||| || || || || | |||||||| ||||| ||
Sbjct 7109 TGTCGATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 7157
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||||| ||| || | | ||| | || ||||||| || |||||| ||||| || ||
Sbjct 6206 TTATTGGCCGCCACGAAGACGGAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATA 6265
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
|||| || || || |||| || | |||||| || ||||| || | |||||||||||
Sbjct 6266 GTCGCTCAGGGTACGACCGTCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTC 6325
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539
|| || | | |||||| ||| ||||| ||| | | | | |||||| ||
Sbjct 6326 GGGAGGAATACCCTCCTTATCCTGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGA 6385
Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || |||| ||| || || ||||| |||| ||| || || ||||| |||||
Sbjct 6386 CTCGACTTCCAACGTAATCGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565219930835280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |