Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1802 140 3e-28
seq1474 131 2e-25
seq1284 122 9e-23
>seq1802
Length=45256
Score = 140 bits (154), Expect = 3e-28
Identities = 197/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
|||||| ||||||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 29662 GTAGGTATCGATGAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 29721
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| || |||||| ||||| || || | ||| ||||| || || ||
Sbjct 29722 GCCGTAGAAGCAGCGAGCCTCGGGGACCTGGACCTCGCCGGAGAAGCGCTCAACGAGGTT 29781
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||||||||||| || || |||||||| ||||| || | ||| |||||| |
Sbjct 29782 CTCGTTGACGATACCATCCGACGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTACTT 29841
Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | |||| || | | ||||||| | |||||||| || || | ||||||
Sbjct 29842 CTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTC 29901
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||||| || || |||||||| || ||||||||
Sbjct 29902 GGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 29937
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953
||| ||||||||| |||| |||||| || | ||| ||||| |||||| ||| ||||
Sbjct 29132 GCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAG 29191
Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAA 132999
||||||||||| || || || |||||||| || |||| ||| |||
Sbjct 29192 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCAAAA 29237
>seq1474
Length=13610
Score = 131 bits (144), Expect = 2e-25
Identities = 147/194 (76%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| |||| |||||| || |||| | | | | |||| | ||
Sbjct 7159 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGATACCATCGACAACG-TCAAG 7101
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| || | ||||| ||||| |||||| ||||||| ||||| ||||||| ||| |||
Sbjct 7100 TCCAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCTGGC 7041
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| ||||| || |||| |||||||| ||| ||||||||||| ||||| | || ||
Sbjct 7040 AAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCTACCCTT 6981
Query 38445 CATTTGGTGCTGCG 38458
|| ||||| || ||
Sbjct 6980 CACTTGGTTCTCCG 6967
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| || || ||||| || || || |||| || || | |
Sbjct 6667 ATGCAGATTTTCGTCAAAACTCTTACTGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 6608
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| |||| || |||| ||||| ||||| ||||| |||||||
Sbjct 6607 GACACCATTGACAACG-TTAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCA 6549
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| || || ||||| || || | ||||| | ||||||||
Sbjct 6548 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGACTACAA 6489
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| || ||||| | || |||||| | || |||||| || | || ||
Sbjct 6488 CATTCAGAAGGAGTCAACCCTGCATCTCGTCCTGCGTCTGCGTGGTGG 6441
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || |||||||| ||||| |||||||| |||| |||||| | | || | |
Sbjct 6885 TCGTCAAGACGCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCTTCTGATACTATCG 6826
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || || | || || ||||| |||||| | ||||| ||||| | |
Sbjct 6825 ACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGA 6766
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | || ||||| || || || |||| ||||||||| |||||||||||| || ||||
Sbjct 6765 TCTTTGCTGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGG 6706
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459
| | || || || ||||| || |||
Sbjct 6705 AGTCTACCCTCCACTTGGTCCTTCGT 6680
>seq1284
Length=15898
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || |||||||| || |||||| | || || ||| | ||
Sbjct 6050 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 6109
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| |||||||
Sbjct 6110 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6169
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| || || ||||| || |||| |||||||| ||||||||||
Sbjct 6170 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 6229
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || |||| |||||
Sbjct 6230 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 6264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500156456853760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |