Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1393 266 4e-66 seq2483 149 8e-31 >seq1393 Length=78613 Score = 266 bits (294), Expect = 4e-66 Identities = 485/710 (68%), Gaps = 0/710 (0%) Strand=Plus/Plus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 8674 ATGGCGGCCTGGACGGCAGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 8733 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || || || || | | | || | ||||| || || || Sbjct 8734 GGCTCCTTGCCGTTGAAGTAGTCGGAGATAAGCTTCTGGACACGGGGGATACGGGTGGAA 8793 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 || ||||||| ||||| || | || | || || |||| ||| | ||| || Sbjct 8794 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGACCTTGGCGTCGGTGAGGACA 8853 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || | || ||||||| |||| || || ||||| || || ||| Sbjct 8854 CGGTCGACGGGCTGGATGGTAGAGCGGAACAGGTCCTGGCAGAGCTCCTCGAAGCGAGCA 8913 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| |||| || ||| | | || || || || |||| || Sbjct 8914 CGGGTGATGGAGGTGTAGAAGTCAATACCCTCGAACAGGGAGTCGATCTCGATGGAGGTC 8973 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | ||| || | || ||||| || ||||| || || || || | ||| || ||| Sbjct 8974 TGAGCAGACGAGGACAGGGTGCGCTTGGCACGCTCGCAGGCGGTGCGAAGACGGCGCAGG 9033 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441 || || | ||| ||| | || ||||| || || || || ||||| | |||||| Sbjct 9034 GCGCGGGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGG 9093 Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 | ||| | ||||| || |||||||||||||| || || || ||||| | ||| Sbjct 9094 TTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTG 9153 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || || || || || | |||||| | || | || ||||| || ||||||||||| || Sbjct 9154 ACCTCGAAAATGCCCTCCTCAATGGTCAAGAGGGACACATCGAAAGTACCACCACCAAGA 9213 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 || || ||||| ||||| ||| | || ||||| ||||||||||| || || || Sbjct 9214 TCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCGAGACCGTAGGCAATGGCG 9273 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 || || || || || || || ||||||||| ||| ||||||||||| | || || Sbjct 9274 GCAGCGGTGGGCTCGTTGATGATACGAAGAACGTTGAGGCCAGCAATGAGACCGGCGTCC 9333 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 || || || || || || || ||||| |||||||| ||||| || ||||| Sbjct 9334 TTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGTGACGAC 9383 >seq2483 Length=9930 Score = 149 bits (164), Expect = 8e-31 Identities = 348/521 (67%), Gaps = 13/521 (2%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAA 7299 ||| ||||| ||||| |||||||| || || || ||| || |||| ||| | | Sbjct 7822 CAGGTCCTCGAAACGAGCACGGGTGATCTGGGTGGTGTAG---TCCTCGCCATCGAAGAG 7878 Query 7300 CGAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357 || || || |||||||| || || || || | || | || ||||| || ||||| Sbjct 7879 AGAGTCGATCTCAATGGTGGTCTGGGCACCGCTG--GAAAGGGTACGCTTGGCACGCTCG 7936 Query 7358 CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA 7417 || || || || | |||||| |||||||| |||| || || | || ||||| || Sbjct 7937 CAAGCAGTGCGGAGACGACGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTG 7996 Query 7418 CGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 || | || || | | |||| ||| || | | |||||||| | |||||||||| Sbjct 7997 CGCTGGAAGTCCTTCTTGCAGTGGTCAAGAAGGTTGGTGTCGAAATCCTGACCACCCAAG 8056 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || ||||| || ||||| |||| ||| || | ||||| | | || Sbjct 8057 TGGGTGTCACCAGCGGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTTAAGGAGGGAG 8116 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTG 7594 ||||| || ||||||||||||| ||| | ||||| ||||| || | | | ||| Sbjct 8117 ACATCGAAAGTACCACCACCCAAGTCGTAGATGAGAACGTTGCGCTCCTTGCCAGACTTG 8176 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | | |||||||| || || || || || || || || || || ||||| || | Sbjct 8177 CCGGCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACG 8236 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || || || | | || || || || || || || || ||||| |||||| Sbjct 8237 TTAAGACCGGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 8296 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| || | ||| || | | ||| ||||| || || Sbjct 8297 GCAGGGACGGTGATGACGGCCTTCTCGACCTTCTTGCCAAG 8337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635112047035760