Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1393 266 4e-66
seq2483 149 8e-31
>seq1393
Length=78613
Score = 266 bits (294), Expect = 4e-66
Identities = 485/710 (68%), Gaps = 0/710 (0%)
Strand=Plus/Plus
Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081
|||||||| ||||| | || ||||| || || |||||||||||||| || | || ||
Sbjct 8674 ATGGCGGCCTGGACGGCAGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 8733
Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141
| || || ||||| || || || || | | | || | ||||| || || ||
Sbjct 8734 GGCTCCTTGCCGTTGAAGTAGTCGGAGATAAGCTTCTGGACACGGGGGATACGGGTGGAA 8793
Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201
|| ||||||| ||||| || | || | || || |||| ||| | ||| ||
Sbjct 8794 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGACCTTGGCGTCGGTGAGGACA 8853
Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261
||||| || | || ||||||| |||| || || ||||| || || |||
Sbjct 8854 CGGTCGACGGGCTGGATGGTAGAGCGGAACAGGTCCTGGCAGAGCTCCTCGAAGCGAGCA 8913
Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321
||||| ||||| || ||||| |||| || ||| | | || || || || |||| ||
Sbjct 8914 CGGGTGATGGAGGTGTAGAAGTCAATACCCTCGAACAGGGAGTCGATCTCGATGGAGGTC 8973
Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381
|| || | ||| || | || ||||| || ||||| || || || || | ||| || |||
Sbjct 8974 TGAGCAGACGAGGACAGGGTGCGCTTGGCACGCTCGCAGGCGGTGCGAAGACGGCGCAGG 9033
Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441
|| || | ||| ||| | || ||||| || || || || ||||| | ||||||
Sbjct 9034 GCGCGGGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGG 9093
Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501
| ||| | ||||| || |||||||||||||| || || || ||||| | |||
Sbjct 9094 TTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTG 9153
Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561
|| || || || || | |||||| | || | || ||||| || ||||||||||| ||
Sbjct 9154 ACCTCGAAAATGCCCTCCTCAATGGTCAAGAGGGACACATCGAAAGTACCACCACCAAGA 9213
Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621
|| || ||||| ||||| ||| | || ||||| ||||||||||| || || ||
Sbjct 9214 TCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCGAGACCGTAGGCAATGGCG 9273
Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681
|| || || || || || || ||||||||| ||| ||||||||||| | || ||
Sbjct 9274 GCAGCGGTGGGCTCGTTGATGATACGAAGAACGTTGAGGCCAGCAATGAGACCGGCGTCC 9333
Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
|| || || || || || || ||||| |||||||| ||||| || |||||
Sbjct 9334 TTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGTGACGAC 9383
>seq2483
Length=9930
Score = 149 bits (164), Expect = 8e-31
Identities = 348/521 (67%), Gaps = 13/521 (2%)
Strand=Plus/Plus
Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAA 7299
||| ||||| ||||| |||||||| || || || ||| || |||| ||| | |
Sbjct 7822 CAGGTCCTCGAAACGAGCACGGGTGATCTGGGTGGTGTAG---TCCTCGCCATCGAAGAG 7878
Query 7300 CGAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357
|| || || |||||||| || || || || | || | || ||||| || |||||
Sbjct 7879 AGAGTCGATCTCAATGGTGGTCTGGGCACCGCTG--GAAAGGGTACGCTTGGCACGCTCG 7936
Query 7358 CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA 7417
|| || || || | |||||| |||||||| |||| || || | || ||||| ||
Sbjct 7937 CAAGCAGTGCGGAGACGACGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTG 7996
Query 7418 CGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477
|| | || || | | |||| ||| || | | |||||||| | ||||||||||
Sbjct 7997 CGCTGGAAGTCCTTCTTGCAGTGGTCAAGAAGGTTGGTGTCGAAATCCTGACCACCCAAG 8056
Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537
|| || || || ||||| || ||||| |||| ||| || | ||||| | | ||
Sbjct 8057 TGGGTGTCACCAGCGGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTTAAGGAGGGAG 8116
Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTG 7594
||||| || ||||||||||||| ||| | ||||| ||||| || | | | |||
Sbjct 8117 ACATCGAAAGTACCACCACCCAAGTCGTAGATGAGAACGTTGCGCTCCTTGCCAGACTTG 8176
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
| | |||||||| || || || || || || || || || || ||||| || |
Sbjct 8177 CCGGCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACG 8236
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| || || || || | | || || || || || || || || ||||| ||||||
Sbjct 8237 TTAAGACCGGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 8296
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| ||||| || | ||| || | | ||| ||||| || ||
Sbjct 8297 GCAGGGACGGTGATGACGGCCTTCTCGACCTTCTTGCCAAG 8337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635112047035760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |