Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq719 203 4e-47
seq1802 93.3 5e-14
>seq719
Length=48969
Score = 203 bits (224), Expect = 4e-47
Identities = 1132/1787 (63%), Gaps = 65/1787 (4%)
Strand=Plus/Minus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTCT 111668
|| ||| ||||| ||||||| || || |||| ||| ||||| |||| | || |
Sbjct 17503 CCTCAGCACATGATCATGCGTGTTGCAGTCGGCATC--TGGGGT-GATAACGTCGAGCGT 17447
Query 111669 GTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTC 111728
|| | ||||| ||| || |||||| | | |||| |||||| | || || |||
Sbjct 17446 GTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACACTC 17387
Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788
|||||||||||||| || ||| |||| || ||||| | | | |||||
Sbjct 17386 TTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAA 17327
Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848
|| || || | || ||||||| ||| |||| || ||| ||||| ||| ||||
Sbjct 17326 GACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCT 17267
Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTA 111906
||||| || || | || || | || | || | | ||| || || || |
Sbjct 17266 GGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCTACT--GGCTCCTACATTGCCGGCA 17209
Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966
| || ||| ||| | ||| | ||||| |||||||| || || ||| ||| || ||||
Sbjct 17208 CCAACGGTACATCGAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCT 17149
Query 111967 ATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020
| || |||| | ||| ||||| || | |||| | || |||||||| |
Sbjct 17148 ACGTCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAGCCCT 17092
Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080
||||||| ||| || | |||||| | || ||||| ||||| || | ||||||| |
Sbjct 17091 GGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCC 17032
Query 112081 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139
| ||| |||||||| ||| |||||||||||| || ||||| |||||||||||||| |||
Sbjct 17031 G-TGCTCGCGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAG 16973
Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199
||| | | | ||| | ||| | || || | || || || | | || |
Sbjct 16972 AAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTGCTAC 16913
Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTA------CGAGGAAGAAAGTCGGGCGACT 112253
|| || ||||| || ||| | ||| ||||| ||||| | |||| ||||
Sbjct 16912 GGCGAAGAGTTCGAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTCGCAAGACT 16853
Query 112254 GCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313
| || |||| || | ||| | || || || || |||| |||||||||||
Sbjct 16852 ATCAAGG-CCCAGAAGC-----TTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGC 16799
Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373
| || | ||||| ||||| || ||| |||| ||||| || || ||||| ||||
Sbjct 16798 AACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTGGGA 16739
Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433
||| || ||||||||||| || || ||| | || | | ||||||
Sbjct 16738 ACCATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTC 16679
Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGAC 112492
||||| || ||| | || || | || || |||| | || || | || || | |
Sbjct 16678 GCTGTCTGCAACTTGGCTTCCCTTGCCCTGCCCACCTTCGTTGACTACAACGATGGTGTC 16619
Query 112493 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGT 112552
| ||| | | || || ||||| || || | || ||| | |||| |
Sbjct 16618 -TATGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACTTGAACAAGAT 16560
Query 112553 TATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCG 112609
|||||| || ||||||||| ||| ||||| || || ||| | |||||
Sbjct 16559 CATTGATGTCAACCACTACCCCGTTCCCGAG---GCTCGCAATAGCAACATGCGTCACCG 16503
Query 112610 TCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT 112669
|| |||||||| |||||||| ||||| || |||| ||| | ||| || || ||
Sbjct 16502 CCCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCG-CATGCCTT 16444
Query 112670 T-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728
| || || || || || |||| | || |||||||| || || ||||| |
Sbjct 16443 TCGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTTGAGACCATCTACCACGCTG 16384
Query 112729 CTCTTGAGGCGAGTTCG--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 112786
||| ||| | || || || |||| ||| || || | || || | |||||
Sbjct 16383 CTC-TGA-CCATGTCCGTTCAGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGG 16326
Query 112787 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCA 112846
|| || || || || | ||||| | || |||||| | | || || ||
Sbjct 16325 CTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGATCT 16266
Query 112847 CTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906
| |||||||| |||| ||||| | ||||||||| | ||| | || |||||| | |
Sbjct 16265 TTGGGACTGGGATTCTCTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCT 16206
Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966
| || || ||||| || |||||||| | || |||||||| || || || ||||| ||
Sbjct 16205 CGTTGCCCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGA 16146
Query 112967 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 113026
|||||||| | |||||||| | | | | || || || ||||| | |||||||
Sbjct 16145 GCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCCGGCGAGTTCCAGGTTGTCAA 16086
Query 113027 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA--- 113083
| | || | || ||| || || || || |||||| | | |||||| |
Sbjct 16085 CCCCTGGTTGCTGAAGGATCTCGTCGACATGGGCCTGTGGTCCGATGCCATGAAGAACCG 16026
Query 113084 TCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTA 113142
| |||| | || | | ||||| ||||| || || | ||||| | ||| | |
Sbjct 16025 TATCATCGCCGAGAAC----GGTTCTATTCAGAACATCCCCAACATTCCCGCTGAGGTCA 15970
Query 113143 AGAAGTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCG 113199
|| |||||| || || ||||| || | || | || |||| | ||||| |
Sbjct 15969 AGGCTTTGTACAAGACTGTATGGGAGATCTCCCAGCGCACGGTTGTC---CAGATGGCTG 15913
Query 113200 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCC 113257
| || |||||| |||||| || | |||| ||| | || | |||| | ||
Sbjct 15912 CCGACCGTGGTGCCTTCATCGACC--AGTCCCAGTCCCTCAACATCCACATGAAGGACCC 15855
Query 113258 AACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGG 113317
|| ||| |||| || | |||||| | | | |||||| |||||||| |||||
Sbjct 15854 GACAATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACGGG 15795
Query 113318 GATGTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 113364
||||| ||||| || | ||||| | ||| ||||||||||
Sbjct 15794 CATGTACTACCTGCGTACGCAGGCAGCTTCTGCCCCTATTCAGTTCA 15748
>seq1802
Length=45256
Score = 93.3 bits (102), Expect = 5e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305
|||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||| |||
Sbjct 29221 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 29162
Query 102306 GACGAGGGACTCCACCAAGAGTTTGC 102331
|| ||||| || ||| || |||||
Sbjct 29161 GATGAGGGCCTGCACACCGACTTTGC 29136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620722117242080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |