Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq719 203 4e-47 seq1802 93.3 5e-14 >seq719 Length=48969 Score = 203 bits (224), Expect = 4e-47 Identities = 1132/1787 (63%), Gaps = 65/1787 (4%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTCT 111668 || ||| ||||| ||||||| || || |||| ||| ||||| |||| | || | Sbjct 17503 CCTCAGCACATGATCATGCGTGTTGCAGTCGGCATC--TGGGGT-GATAACGTCGAGCGT 17447 Query 111669 GTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTC 111728 || | ||||| ||| || |||||| | | |||| |||||| | || || ||| Sbjct 17446 GTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACACTC 17387 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 |||||||||||||| || ||| |||| || ||||| | | | ||||| Sbjct 17386 TTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAA 17327 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || || || | || ||||||| ||| |||| || ||| ||||| ||| |||| Sbjct 17326 GACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCT 17267 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTA 111906 ||||| || || | || || | || | || | | ||| || || || | Sbjct 17266 GGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCTACT--GGCTCCTACATTGCCGGCA 17209 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | || ||| ||| | ||| | ||||| |||||||| || || ||| ||| || |||| Sbjct 17208 CCAACGGTACATCGAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCT 17149 Query 111967 ATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 | || |||| | ||| ||||| || | |||| | || |||||||| | Sbjct 17148 ACGTCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAGCCCT 17092 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||||| ||| || | |||||| | || ||||| ||||| || | ||||||| | Sbjct 17091 GGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCC 17032 Query 112081 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 | ||| |||||||| ||| |||||||||||| || ||||| |||||||||||||| ||| Sbjct 17031 G-TGCTCGCGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAG 16973 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| | | | ||| | ||| | || || | || || || | | || | Sbjct 16972 AAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTGCTAC 16913 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTA------CGAGGAAGAAAGTCGGGCGACT 112253 || || ||||| || ||| | ||| ||||| ||||| | |||| |||| Sbjct 16912 GGCGAAGAGTTCGAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTCGCAAGACT 16853 Query 112254 GCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313 | || |||| || | ||| | || || || || |||| ||||||||||| Sbjct 16852 ATCAAGG-CCCAGAAGC-----TTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGC 16799 Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373 | || | ||||| ||||| || ||| |||| ||||| || || ||||| |||| Sbjct 16798 AACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTGGGA 16739 Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433 ||| || ||||||||||| || || ||| | || | | |||||| Sbjct 16738 ACCATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTC 16679 Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGAC 112492 ||||| || ||| | || || | || || |||| | || || | || || | | Sbjct 16678 GCTGTCTGCAACTTGGCTTCCCTTGCCCTGCCCACCTTCGTTGACTACAACGATGGTGTC 16619 Query 112493 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGT 112552 | ||| | | || || ||||| || || | || ||| | |||| | Sbjct 16618 -TATGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACTTGAACAAGAT 16560 Query 112553 TATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCG 112609 |||||| || ||||||||| ||| ||||| || || ||| | ||||| Sbjct 16559 CATTGATGTCAACCACTACCCCGTTCCCGAG---GCTCGCAATAGCAACATGCGTCACCG 16503 Query 112610 TCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT 112669 || |||||||| |||||||| ||||| || |||| ||| | ||| || || || Sbjct 16502 CCCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCG-CATGCCTT 16444 Query 112670 T-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 | || || || || || |||| | || |||||||| || || ||||| | Sbjct 16443 TCGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTTGAGACCATCTACCACGCTG 16384 Query 112729 CTCTTGAGGCGAGTTCG--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 112786 ||| ||| | || || || |||| ||| || || | || || | ||||| Sbjct 16383 CTC-TGA-CCATGTCCGTTCAGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGG 16326 Query 112787 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCA 112846 || || || || || | ||||| | || |||||| | | || || || Sbjct 16325 CTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGATCT 16266 Query 112847 CTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 | |||||||| |||| ||||| | ||||||||| | ||| | || |||||| | | Sbjct 16265 TTGGGACTGGGATTCTCTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCT 16206 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | || || ||||| || |||||||| | || |||||||| || || || ||||| || Sbjct 16205 CGTTGCCCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGA 16146 Query 112967 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 113026 |||||||| | |||||||| | | | | || || || ||||| | ||||||| Sbjct 16145 GCCCTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCCGGCGAGTTCCAGGTTGTCAA 16086 Query 113027 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA--- 113083 | | || | || ||| || || || || |||||| | | |||||| | Sbjct 16085 CCCCTGGTTGCTGAAGGATCTCGTCGACATGGGCCTGTGGTCCGATGCCATGAAGAACCG 16026 Query 113084 TCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTA 113142 | |||| | || | | ||||| ||||| || || | ||||| | ||| | | Sbjct 16025 TATCATCGCCGAGAAC----GGTTCTATTCAGAACATCCCCAACATTCCCGCTGAGGTCA 15970 Query 113143 AGAAGTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCG 113199 || |||||| || || ||||| || | || | || |||| | ||||| | Sbjct 15969 AGGCTTTGTACAAGACTGTATGGGAGATCTCCCAGCGCACGGTTGTC---CAGATGGCTG 15913 Query 113200 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCC 113257 | || |||||| |||||| || | |||| ||| | || | |||| | || Sbjct 15912 CCGACCGTGGTGCCTTCATCGACC--AGTCCCAGTCCCTCAACATCCACATGAAGGACCC 15855 Query 113258 AACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGG 113317 || ||| |||| || | |||||| | | | |||||| |||||||| ||||| Sbjct 15854 GACAATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACGGG 15795 Query 113318 GATGTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 113364 ||||| ||||| || | ||||| | ||| |||||||||| Sbjct 15794 CATGTACTACCTGCGTACGCAGGCAGCTTCTGCCCCTATTCAGTTCA 15748 >seq1802 Length=45256 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 |||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||| ||| Sbjct 29221 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 29162 Query 102306 GACGAGGGACTCCACCAAGAGTTTGC 102331 || ||||| || ||| || ||||| Sbjct 29161 GATGAGGGCCTGCACACCGACTTTGC 29136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722117242080