Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq719 192 7e-44 >seq719 Length=48969 Score = 192 bits (212), Expect = 7e-44 Identities = 1082/1706 (63%), Gaps = 65/1706 (4%) Strand=Plus/Plus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 |||| || || || || ||||| ||||| ||||||||| |||||| || | ||| Sbjct 15771 GCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGC 15830 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || | || ||| | |||||| || ||| | ||| | ||||| ||||| Sbjct 15831 ATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGG 15890 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTTCC 109575 |||||||| |||||| || || ||||| | || | | | || || || ||| Sbjct 15891 TCGATGAAGGCACCACGGTCGGCAGCCATCTGGACAACCGTGCGCT---GGGAGATCTCC 15947 Query 109576 CAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAG 109635 || ||||||||||||||| ||||| ||| ||||||||| |||||| |||||||| Sbjct 15948 CATACAGTCTTGTACAAAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGAATAGA- 16006 Query 109636 CCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTG 109692 ||| || | |||| | | |||||| | | ||||| || || | | | Sbjct 16007 --ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACG 16064 Query 109693 AGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751 ||||| | || ||| | |||||| || || || || ||||| || || | Sbjct 16065 AGATCCTTCAGCAACCAGGG-GTTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTG 16123 Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | |||||||| ||||| ||||| |||||||| | ||| || | |||||| Sbjct 16124 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGA 16183 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC 109871 || || |||||||| || | ||| | |||||| || | ||| | | ||| | | |||| Sbjct 16184 GGCAGTAGGCATGGGGGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTC 16243 Query 109872 ACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGG 109931 || | ||||| || || || || | || ||| |||||| || Sbjct 16244 CTTCAGAGAATCCCAGTCCCAAAGATCAGAG------GGCTTGACATTCCACATGTCGTA 16297 Query 109932 TTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTC 109991 ||||| | ||||| | ||| || |||| | | | ||| | ||||| ||| Sbjct 16298 CTGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTT 16357 Query 109992 GGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGC 110048 ||||| || |||| | | || || || || || || |||||||| || | Sbjct 16358 GGCCAGCTGAACGGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCAAAGATCTTC-- 16412 Query 110049 ATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATC 110105 || |||| || | ||| | | ||||| || | | | | || |||| Sbjct 16413 -TTGTTGAGATCACGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATC 16471 Query 110106 CGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGT 110165 || |||||||| ||||| |||||||||||||| || |||||| ||||| Sbjct 16472 AGCAAGACCCTGGACACCAAGACCAATGGGGCGGTGACGCATGTTGCTATTGCGAGCCTC 16531 Query 110166 TTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGT 110225 |||||||| |||| || |||| | || | || || || || Sbjct 16532 GGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGT 16591 Query 110226 GATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGA-CATATTTGGGGA 110284 || || || || || | | | || | | | || || | | | | |||| | Sbjct 16592 GACCTCGTGAAGCTTCTGGAAGTCATA-GACACCATCGTTGTAGTCAACGAAGGTGGGCA 16650 Query 110285 GAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTT 110344 | |||| || || | ||||| |||| ||| || || ||| || | || | Sbjct 16651 GGGCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCT 16710 Query 110345 CCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGC 110404 | || || | |||||| || ||| |||| ||||||||| || ||| |||| Sbjct 16711 CAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGG 16770 Query 110405 ATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCT 110464 |||||||| ||||||||| | ||| | ||||| || ||||| | || || ||||| | Sbjct 16771 CGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCAT 16830 Query 110465 TCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT--CCTCC---TCGTACT 110518 ||| | | || | ||| || ||| | |||| |||| |||| ||||||| Sbjct 16831 ACCAAAGCTTCTG-GGCCTTGATAGTC----TTGCGAC-CCTTGCCCTCGCGTTCGTACT 16884 Query 110519 TGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC-CTTGTCG 110577 | ||||||| |||| || || | ||||| |||| | | || || || | | Sbjct 16885 TCTCGTACAAGGCCTCGAACTCTTCGCCGTAGCAGTCAGCCA-AGCCAGGGCACTCATTG 16943 Query 110578 GGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATC 110637 || || | ||||| ||| | | || ||| || |||||||||||||| || || ||| Sbjct 16944 GGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATC 17003 Query 110638 CACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGC 110697 || | || |||||| || || ||| |||| || | || ||||| ||| | Sbjct 17004 CAGAGAGCGAGGAAAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAG 17063 Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTA 110757 |||| || || | || ||| | |||||| || || || || | |||| || || | Sbjct 17064 TCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACC---A 17120 Query 110758 CGACGA------CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATA 110811 |||| || |||||| || ||||| || ||| |||||||| | ||||| Sbjct 17121 GGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATG 17180 Query 110812 GGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATG 110871 ||||| | || | ||| ||| || || || ||| ||| | | ||||| || Sbjct 17181 GGAATGACACCGTTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATA 17240 Query 110872 TCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAG 110930 ||| | | |||||| ||||| ||| ||| || || || ||| |||| Sbjct 17241 CGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCT-TGAG 17299 Query 110931 TGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACAT 110990 || | |||||||| ||||| || ||| |||| || | | || ||||| ||||||| Sbjct 17300 GGTGTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAG 17359 Query 110991 CTGAGGAC-GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTT 111049 ||| | || |||| || || || ||||||||||| || | || || ||| ||| ||| Sbjct 17360 CTG-GCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTT 17416 Query 111050 G--GGACATCTTGTTGTATGTGTCGA 111073 | |||||| |||||| || |||| Sbjct 17417 GCTGGACATGAGGTTGTAGGTCTCGA 17442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588956755209200