Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq719 159 4e-34 >seq719 Length=48969 Score = 159 bits (176), Expect = 4e-34 Identities = 1124/1788 (63%), Gaps = 65/1788 (4%) Strand=Plus/Plus Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617 |||||||||| ||| | ||||| | || || |||||||| || |||||||| | Sbjct 15748 TGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGAC 15807 Query 105618 CTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 105677 | | ||||| || | ||||| | || |||| ||| || || | |||| Sbjct 15808 CAAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGT 15867 Query 105678 AAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAAT 105735 | || | ||| |||| |||| |||||| |||||| | || ||||| | Sbjct 15868 GGATGTTGAGGGACTGGGACT--GGTCGATGAAGGCACCACGGTCGGCAGCCATCTG--- 15922 Query 105736 GACATCCTTCATCTTG---ATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGG 105792 |||| || | || | || ||||| || || ||| | | ||||| ||| | || Sbjct 15923 GACAACCGTGCGCTGGGAGATCTCCCATACAGTCTTGTACAAAGCCTTGACCTCAGCGGG 15982 Query 105793 GATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTT 105852 || | | ||| || ||||| ||||| | | || || | | |||||| | | Sbjct 15983 AATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATC 16042 Query 105853 GGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTC 105912 |||||| || || || | |||||| || | | |||||||| | ||||| Sbjct 16043 GGACCACAGGCCCATGTCGACGAGATCCTTCAGCAACCAGGGGTTGACAACCTGGAACTC 16102 Query 105913 TCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATT 105972 || || || | | | | |||||||| | |||||||| || ||||| || || || Sbjct 16103 GCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTT 16162 Query 105973 ACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAG 106032 |||||||| || | |||||||| || ||||| || || | | | |||||| || | Sbjct 16163 GCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACGAGCAAACTGTTGCGCAC 16222 Query 106033 ACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCA 106090 ||| | |||||||| | ||||| ||| ||||||||| | | | || || || | Sbjct 16223 ACCGTGCTCCTTGATCTGCTCCTTCAGAGAATCCCAGTCCCAAAGATCAGAG-GGCTTGA 16281 Query 106091 CCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCA 106150 | |||| |||| || | ||||| | || ||||| | || || ||||| | || Sbjct 16282 CATTCC-ACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAG 16340 Query 106151 TAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTT 106210 |||| || | | | |||| | | | | ||| | ||||| || ||||| Sbjct 16341 TAGGTGCCCTCCTCCTTGGCCAGCTGAACGGACATGGTCAGAGCAGCGTGGTAGATGGTC 16400 Query 106211 TCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGC 106265 |||||||| || | || ||| ||| || || || |||| || | Sbjct 16401 TCAAAGATCTTCTTGTTGAGATCACGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCG 16460 Query 106266 ACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATAT 106325 | ||| |||| || ||||| || ||||| | |||||| || | ||| ||||| | Sbjct 16461 AGGAAAG-----CATCAGCAAGACCCTGGACACCAAGACCAATGGGGCGGTGACGCATGT 16515 Query 106326 TAGACTTTCGCGCAGTCTC---AACGGGATAAAAATTTCTGTCAATGA-CTCGGTTTAGA 106381 | || | ||| || ||| |||||| || || ||||||| || | | || Sbjct 16516 TG--CTATTGCG-AGCCTCGGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAG- 16571 Query 106382 TTTTTGGTAACAAT---CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTC 106438 ||| ||||| || |||| || ||||| || | | ||| | | | Sbjct 16572 ---TTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCATAGACACCATCG 16628 Query 106439 TCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCC 106498 | | | || | | || ||||| | || ||||| ||||| ||||| |||||| Sbjct 16629 TTGTAGTCAACGAAGGTGGGCAGGGCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCG 16688 Query 106499 TTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTC 106558 | | |||||| | || || || || | |||||| || || || |||| ||| Sbjct 16689 GGAGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTC 16748 Query 106559 TTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 106618 || ||||| ||||| |||| |||||||||||||||||| |||| | || ||||| Sbjct 16749 TTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCG 16808 Query 106619 GTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGC-TGGTACAATGGCGTTGGCCC 106676 ||||| | || || || || | ||| | | || | | | || || | || | ||| Sbjct 16809 GTCTGAGCCTCAAGGATGGCATACCAAAGCTTCTGGGCCTTGATAGTCTTGC---GACCC 16865 Query 106677 GT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAG 106735 | ||||| |||||||| ||| | ||| || ||||| || || ||| | Sbjct 16866 TTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCTCGAACTCTTCGCCGTAGCAGTCAGCC 16925 Query 106736 AGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTC 106795 | || || || | || || | || | ||| | | || ||| || | |||| Sbjct 16926 AAGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTC 16985 Query 106796 ATGAAAAGGTCTGGAATCC--ACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCG 106852 ||||| || || || |||| | || || |||| ||||| | | ||| || |||| || Sbjct 16986 ATGAACAGATCGGGGATCCAGAGAGCGAGGAAA--AGATCGCGAGCACGGA-CCTCCTCC 17042 Query 106853 TCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGA 106912 | || ||||| || || || | |||||| | || ||| |||||||| |||||||| Sbjct 17043 TTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGG 17102 Query 106913 TAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTG 106966 || | |||| | || ||||| ||| | || | || ||||| || ||| Sbjct 17103 TAAATGGCGAAGGCACC---AGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTG 17159 Query 106967 GCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATA 107026 ||| || || |||||||| ||||| | ||| | ||| ||| || || || ||| Sbjct 17160 TTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGATGTACCGTTGGTGCCGGCAATG 17219 Query 107027 CGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAG 107086 || | | || | | | || || | ||||| || |||||| ||| ||| Sbjct 17220 TAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAG 17279 Query 107087 ATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCG 107146 || || || | | || || | || ||||| | || ||||| ||||| || || Sbjct 17280 ATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCG 17339 Query 107147 ATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGT 107205 | |||||||| |||| ||| | || || |||||||| |||||||| || || | Sbjct 17340 ACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGA 17398 Query 107206 TGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 107263 ||||| ||| | | |||| |||||| || ||| ||||| | |||| || | | Sbjct 17399 GGCGTGGGTGA--AGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACACGCTCGACG 17456 Query 107264 TCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 | || || |||||||| || |||||||| | ||||| || ||| Sbjct 17457 TTATCACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGAGGT 17504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589961522377360