Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq719 159 4e-34
>seq719
Length=48969
Score = 159 bits (176), Expect = 4e-34
Identities = 1124/1788 (63%), Gaps = 65/1788 (4%)
Strand=Plus/Plus
Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617
|||||||||| ||| | ||||| | || || |||||||| || |||||||| |
Sbjct 15748 TGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGAC 15807
Query 105618 CTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 105677
| | ||||| || | ||||| | || |||| ||| || || | ||||
Sbjct 15808 CAAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGT 15867
Query 105678 AAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAAT 105735
| || | ||| |||| |||| |||||| |||||| | || ||||| |
Sbjct 15868 GGATGTTGAGGGACTGGGACT--GGTCGATGAAGGCACCACGGTCGGCAGCCATCTG--- 15922
Query 105736 GACATCCTTCATCTTG---ATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGG 105792
|||| || | || | || ||||| || || ||| | | ||||| ||| | ||
Sbjct 15923 GACAACCGTGCGCTGGGAGATCTCCCATACAGTCTTGTACAAAGCCTTGACCTCAGCGGG 15982
Query 105793 GATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTT 105852
|| | | ||| || ||||| ||||| | | || || | | |||||| | |
Sbjct 15983 AATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATC 16042
Query 105853 GGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTC 105912
|||||| || || || | |||||| || | | |||||||| | |||||
Sbjct 16043 GGACCACAGGCCCATGTCGACGAGATCCTTCAGCAACCAGGGGTTGACAACCTGGAACTC 16102
Query 105913 TCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATT 105972
|| || || | | | | |||||||| | |||||||| || ||||| || || ||
Sbjct 16103 GCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTT 16162
Query 105973 ACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAG 106032
|||||||| || | |||||||| || ||||| || || | | | |||||| || |
Sbjct 16163 GCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACGAGCAAACTGTTGCGCAC 16222
Query 106033 ACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCA 106090
||| | |||||||| | ||||| ||| ||||||||| | | | || || || |
Sbjct 16223 ACCGTGCTCCTTGATCTGCTCCTTCAGAGAATCCCAGTCCCAAAGATCAGAG-GGCTTGA 16281
Query 106091 CCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCA 106150
| |||| |||| || | ||||| | || ||||| | || || ||||| | ||
Sbjct 16282 CATTCC-ACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAG 16340
Query 106151 TAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTT 106210
|||| || | | | |||| | | | | ||| | ||||| || |||||
Sbjct 16341 TAGGTGCCCTCCTCCTTGGCCAGCTGAACGGACATGGTCAGAGCAGCGTGGTAGATGGTC 16400
Query 106211 TCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGC 106265
|||||||| || | || ||| ||| || || || |||| || |
Sbjct 16401 TCAAAGATCTTCTTGTTGAGATCACGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCG 16460
Query 106266 ACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATAT 106325
| ||| |||| || ||||| || ||||| | |||||| || | ||| ||||| |
Sbjct 16461 AGGAAAG-----CATCAGCAAGACCCTGGACACCAAGACCAATGGGGCGGTGACGCATGT 16515
Query 106326 TAGACTTTCGCGCAGTCTC---AACGGGATAAAAATTTCTGTCAATGA-CTCGGTTTAGA 106381
| || | ||| || ||| |||||| || || ||||||| || | | ||
Sbjct 16516 TG--CTATTGCG-AGCCTCGGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAG- 16571
Query 106382 TTTTTGGTAACAAT---CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTC 106438
||| ||||| || |||| || ||||| || | | ||| | | |
Sbjct 16572 ---TTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCATAGACACCATCG 16628
Query 106439 TCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCC 106498
| | | || | | || ||||| | || ||||| ||||| ||||| ||||||
Sbjct 16629 TTGTAGTCAACGAAGGTGGGCAGGGCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCG 16688
Query 106499 TTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTC 106558
| | |||||| | || || || || | |||||| || || || |||| |||
Sbjct 16689 GGAGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTC 16748
Query 106559 TTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 106618
|| ||||| ||||| |||| |||||||||||||||||| |||| | || |||||
Sbjct 16749 TTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCG 16808
Query 106619 GTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGC-TGGTACAATGGCGTTGGCCC 106676
||||| | || || || || | ||| | | || | | | || || | || | |||
Sbjct 16809 GTCTGAGCCTCAAGGATGGCATACCAAAGCTTCTGGGCCTTGATAGTCTTGC---GACCC 16865
Query 106677 GT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAG 106735
| ||||| |||||||| ||| | ||| || ||||| || || ||| |
Sbjct 16866 TTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCTCGAACTCTTCGCCGTAGCAGTCAGCC 16925
Query 106736 AGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTC 106795
| || || || | || || | || | ||| | | || ||| || | ||||
Sbjct 16926 AAGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTC 16985
Query 106796 ATGAAAAGGTCTGGAATCC--ACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCG 106852
||||| || || || |||| | || || |||| ||||| | | ||| || |||| ||
Sbjct 16986 ATGAACAGATCGGGGATCCAGAGAGCGAGGAAA--AGATCGCGAGCACGGA-CCTCCTCC 17042
Query 106853 TCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGA 106912
| || ||||| || || || | |||||| | || ||| |||||||| ||||||||
Sbjct 17043 TTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGG 17102
Query 106913 TAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTG 106966
|| | |||| | || ||||| ||| | || | || ||||| || |||
Sbjct 17103 TAAATGGCGAAGGCACC---AGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTG 17159
Query 106967 GCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATA 107026
||| || || |||||||| ||||| | ||| | ||| ||| || || || |||
Sbjct 17160 TTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGATGTACCGTTGGTGCCGGCAATG 17219
Query 107027 CGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAG 107086
|| | | || | | | || || | ||||| || |||||| ||| |||
Sbjct 17220 TAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAG 17279
Query 107087 ATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCG 107146
|| || || | | || || | || ||||| | || ||||| ||||| || ||
Sbjct 17280 ATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCG 17339
Query 107147 ATAAGGAAGCAACTGGACATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGT 107205
| |||||||| |||| ||| | || || |||||||| |||||||| || || |
Sbjct 17340 ACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGA 17398
Query 107206 TGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 107263
||||| ||| | | |||| |||||| || ||| ||||| | |||| || | |
Sbjct 17399 GGCGTGGGTGA--AGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACACGCTCGACG 17456
Query 107264 TCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311
| || || |||||||| || |||||||| | ||||| || |||
Sbjct 17457 TTATCACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGAGGT 17504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589961522377360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |