Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 143 6e-29
seq1284 134 3e-26
seq719 84.2 5e-11
>seq1474
Length=13610
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || || ||||| || ||||| ||||| || | | ||| | ||||| ||
Sbjct 6459 ACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGTGCGACCATCCTCA 6518
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || ||||| |||||||| || || ||||||||
Sbjct 6519 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCTTGG 6578
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| ||||||||||| ||| ||| || || || |||| ||||||
Sbjct 6579 ATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTG 6638
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | |||||| ||||| | |||||
Sbjct 6639 CCAGTAAGAGTTTTGACGAAAATCTGCAT 6667
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || || ||||| || || || || || ||| || || | || |||||
Sbjct 6231 ACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTACGACCGTCTTCC 6290
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || ||||||||||| || || ||||| |||||||| || || || || |||
Sbjct 6291 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGA 6350
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| ||||| ||||| || || ||||| | |||| ||||||
Sbjct 6351 ATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTG 6410
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || ||||| | |||||
Sbjct 6411 CCAGTCAACGTCTTGACGAAGATCTGCAT 6439
>seq1284
Length=15898
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| |||| || || | || || |||
Sbjct 6258 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 6199
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 6198 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 6139
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| || ||||| |||||||| | |||||
Sbjct 6138 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 6079
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTG 195153
|| |||| || || ||||| | ||||| || ||||||
Sbjct 6078 CCCGTCAGGGTCTTGACGAAGATCTGCATGATTGCCTACTTG 6037
>seq719
Length=48969
Score = 84.2 bits (92), Expect = 5e-11
Identities = 190/283 (67%), Gaps = 2/283 (1%)
Strand=Plus/Minus
Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646
||||| ||| |||||| ||||||| |||||||||||||| | | || | || |
Sbjct 17019 TTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGACT 16960
Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706
||| ||| | || |||||||| ||||| | | ||| || || |||||||
Sbjct 16959 GGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTGCTACGGCGAAGAGTTCG 16900
Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAA 160765
|| | | || || | |||||| ||||| ||| | | || | | ||||||||
Sbjct 16899 AGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTCGCAAGACTA-TCAAGGCCCAG 16841
Query 160766 GAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATAC 160825
| || ||| || |||||||| || || |||| || | ||||| || |||
Sbjct 16840 AAGCTTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTCTAC 16781
Query 160826 AAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868
||||||||| | |||||||| |||||||||||| | ||||
Sbjct 16780 AAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 16738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109444441380938
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |