Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1593 105 5e-18 >seq1593 Length=35623 Score = 105 bits (116), Expect = 5e-18 Identities = 419/661 (63%), Gaps = 55/661 (8%) Strand=Plus/Plus Query 29775 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGC 29834 ||| ||||| | ||| || || ||| |||| |||||||| ||| ||||||||| || Sbjct 922 TCTCGGCTCGCGCTCTAGTTGCACCTTGAGCGCGTCCACGTGGTCCGCGTAGACGTGCGC 981 Query 29835 GTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT 29893 ||| |||| | ||| | | || ||||||| | || || | | || ||||||| Sbjct 982 GTCGCCCATGACGTGCGTGAGGCT-TCCCGGTACCAGATCGCACGCCCGCGCAATCATGT 1040 Query 29894 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 29953 || ||||| | ||||||||| ||||| |||||||| ||||| |||||||| | |||| Sbjct 1041 GTGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGTACGCCGAGTCCCATGTCGCAGGACC 1100 Query 29954 TCTGGTAGAGCTGACACGAGAGCT----------------CTC--------------CGT 29983 |||||| ||||| || ||| | ||| || Sbjct 1101 GCTGGTACAGCTGGCAATGGAGGTGGCCCTTTGGCTTCTCCTCATTTGCGAGCGTTGCGC 1160 Query 29984 CGC----TC-----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAG 30025 ||| || ||||||||||| | ||||| |||||||| || || | Sbjct 1161 CGCGGGCTCGCGGGTACGAGACGTAAAACTGCGCAAACATG---TGGCACGGCGGGAGCG 1217 Query 30026 CCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30085 |||| || ||| || ||||| |||| | || |||||| | ||| | |||| Sbjct 1218 CCATCTTCTTCAGGTCCGCTGGATTCCACGCGCTGAGGAGGATGCGGCGGTCGTAAGGGT 1277 Query 30086 TGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145 | || ||| || | | | | ||| || || || ||| |||| ||| || | Sbjct 1278 TCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTGTAATCCG 1337 Query 30146 CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30205 | | ||| |||||| || || || || | ||| ||||| |||||||| || || | Sbjct 1338 TCTTGGAGTCGACGTACTCGGCGCCAAAGTGGCGCCATTGGAAGCCGTACACGGGGCCGA 1397 Query 30206 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30265 |||| || |||| | ||| || ||| |||| | || || | || |||||| Sbjct 1398 GGTCGCCGACTTCGCGGTGTGAGAGGCCGACGCTGTCGAGGAACTCGCGCGATCCGTTGC 1457 Query 30266 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACG 30324 ||||||||||||| || || ||| ||| | || |||| ||||| |||| Sbjct 1458 CGTCCCAGATCTTGACGCCTGCTTCGCTCAGCGCGAGCGACGATGTGTTGCCCTC-GACG 1516 Query 30325 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30384 ||||| || || || | | ||| || ||||| | ||| || |||||||||||| Sbjct 1517 AACCAGAGGAGTTCGGCGATGACTGCGCGGAGGAAGACACGCTTCGTTGTGAGGAGGGGA 1576 Query 30385 A 30385 | Sbjct 1577 A 1577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408604582209422