Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq1593 105 5e-18
>seq1593
Length=35623
Score = 105 bits (116), Expect = 5e-18
Identities = 419/661 (63%), Gaps = 55/661 (8%)
Strand=Plus/Plus
Query 29775 TCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGC 29834
||| ||||| | ||| || || ||| |||| |||||||| ||| ||||||||| ||
Sbjct 922 TCTCGGCTCGCGCTCTAGTTGCACCTTGAGCGCGTCCACGTGGTCCGCGTAGACGTGCGC 981
Query 29835 GTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGT 29893
||| |||| | ||| | | || ||||||| | || || | | || |||||||
Sbjct 982 GTCGCCCATGACGTGCGTGAGGCT-TCCCGGTACCAGATCGCACGCCCGCGCAATCATGT 1040
Query 29894 ACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACC 29953
|| ||||| | ||||||||| ||||| |||||||| ||||| |||||||| | ||||
Sbjct 1041 GTGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGTACGCCGAGTCCCATGTCGCAGGACC 1100
Query 29954 TCTGGTAGAGCTGACACGAGAGCT----------------CTC--------------CGT 29983
|||||| ||||| || ||| | ||| ||
Sbjct 1101 GCTGGTACAGCTGGCAATGGAGGTGGCCCTTTGGCTTCTCCTCATTTGCGAGCGTTGCGC 1160
Query 29984 CGC----TC-----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAG 30025
||| || ||||||||||| | ||||| |||||||| || || |
Sbjct 1161 CGCGGGCTCGCGGGTACGAGACGTAAAACTGCGCAAACATG---TGGCACGGCGGGAGCG 1217
Query 30026 CCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGT 30085
|||| || ||| || ||||| |||| | || |||||| | ||| | ||||
Sbjct 1218 CCATCTTCTTCAGGTCCGCTGGATTCCACGCGCTGAGGAGGATGCGGCGGTCGTAAGGGT 1277
Query 30086 TGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145
| || ||| || | | | | ||| || || || ||| |||| ||| || |
Sbjct 1278 TCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTGTAATCCG 1337
Query 30146 CCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCA 30205
| | ||| |||||| || || || || | ||| ||||| |||||||| || || |
Sbjct 1338 TCTTGGAGTCGACGTACTCGGCGCCAAAGTGGCGCCATTGGAAGCCGTACACGGGGCCGA 1397
Query 30206 GGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30265
|||| || |||| | ||| || ||| |||| | || || | || ||||||
Sbjct 1398 GGTCGCCGACTTCGCGGTGTGAGAGGCCGACGCTGTCGAGGAACTCGCGCGATCCGTTGC 1457
Query 30266 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACG 30324
||||||||||||| || || ||| ||| | || |||| ||||| ||||
Sbjct 1458 CGTCCCAGATCTTGACGCCTGCTTCGCTCAGCGCGAGCGACGATGTGTTGCCCTC-GACG 1516
Query 30325 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30384
||||| || || || | | ||| || ||||| | ||| || ||||||||||||
Sbjct 1517 AACCAGAGGAGTTCGGCGATGACTGCGCGGAGGAAGACACGCTTCGTTGTGAGGAGGGGA 1576
Query 30385 A 30385
|
Sbjct 1577 A 1577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408604582209422
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |