Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq719 345 8e-90 seq1802 93.3 8e-14 >seq719 Length=48969 Score = 345 bits (382), Expect = 8e-90 Identities = 1145/1757 (65%), Gaps = 84/1757 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || ||| ||| |||| || || || ||||||||||| ||||| Sbjct 15744 ACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 15803 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| ||||||| | |||||| |||| ||| |||| | || | Sbjct 15804 AGACCAAGCTT---CCAGCCGGCGAAGTGCAT-GCTGGTGA---TCTTGCCC---ATTGT 15853 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 | |||| | | |||| | ||| |||||||| |||||| ||||| | | Sbjct 15854 CGGGTCCTTCATGTGG---------ATGTTGAGGGACTGGGACTGGTCGATGAAGGCACC 15904 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | | | | |||||||| |||||| || |||||| | | Sbjct 15905 ACGGTCGGCAGCCATCTGGACAACCGTGCGCTGGGAGATCTCCCATACAGTCTTGTACAA 15964 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845 | |||| || | || | | |||||||||||| | ||| || | | ||| | Sbjct 15965 AGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCGATGAT 16024 Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905 | | | |||| | ||| ||| |||||| || | || ||| | || Sbjct 16025 ACGGTTCTT---CATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAGCAACCA 16081 Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 |||||||| | |||||| || || | || || | | |||||| | ||| || ||||| Sbjct 16082 GGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTA 16141 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 |||||||| || ||||||||| |||| ||||| | |||| ||| || |||||||| || Sbjct 16142 GGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGC 16201 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTC 213085 || || | |||||| | ||| |||||||| ||| | | || ||||||| Sbjct 16202 AACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAATCCCAGTC 16261 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 ||| |||| | ||| || ||||||||||| |||| | ||| || | Sbjct 16262 CCAAAGATCAGAGGG---------CTTGACATTCCACATGTCGTACTGAAGGATACCCTG 16312 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 | | ||| ||||| ||| | |||||||| ||| | |||||||||||||| ||| Sbjct 16313 GGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACGGA 16372 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 | ||| ||||||| ||||||||| ||||| |||| | ||||||| | |||||| Sbjct 16373 CATGGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACGGGCCTC 16432 Query 213266 TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325 || ||| ||| ||||| | | |||| ||||||| || |||||||| || | Sbjct 16433 AGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAG 16492 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 || ||||| | ||| | || ||| ||| |||| ||| | |||||| |||| Sbjct 16493 ACCAATGGGGCGGTGACGCATGTTGCTATTGCGAGC-CTCGGGAACGGGGTAGTGGTTGA 16551 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444 || ||||||||||| | |||||| | || | ||||| | | || | | Sbjct 16552 CATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTC---- 16607 Query 213445 GATTGAACACGTAGCCCCC------GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCA 213498 | ||| | ||| | || || | || || |||||||| | | |||| Sbjct 16608 --TGGAAGTCATAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGGGCAAGGGAAGCCA 16665 Query 213499 GGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTG 213557 |||||| || || ||||| | | ||| | |||||| |||||||| ||||| |||||| Sbjct 16666 AGTTGCAGACAGCGACCTCATCGGGAG-CGCAGTACTCAATGATCTCAGTGCAGAGGTTG 16724 Query 213558 CTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAG 213617 || |||||||| |||||||||| ||||| ||| |||||| | |||||||||| Sbjct 16725 GAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAG 16784 Query 213618 AGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTACC 213675 |||||| ||||| || ||||| ||| | | | || | |||| ||| || | | Sbjct 16785 AGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGA--TGGCATACCAAAGCTTCT 16842 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCG 213734 |||||||| | || | | | | | | || ||||||| ||||| | | Sbjct 16843 GGGCCTTGA----TAGTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGCC 16898 Query 213735 TTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCT 213793 | ||| || | ||| || | | | ||| || || || ||| ||||||||| | Sbjct 16899 TCGAACTCTTCGCCGTAGCAGTCAG-CCAAGCCAGGGCACTCATTGGGGCACATGAGGGT 16957 Query 213794 CCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 |||||| || || |||| |||||||| ||||||||| || |||| ||| || ||| || Sbjct 16958 CCAGTCGGCGTTCTTCTC-GACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGA 17016 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 | || || | | | ||| ||| || ||| ||||||| || | || || | Sbjct 17017 AAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGA 17076 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGC 213969 ||| || |||||||| ||||| | ||| ||||| ||||| || | || | ||||| | Sbjct 17077 AGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCAC 17136 Query 213970 CCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCCCG 214025 ||||||| | | | || | || ||||||||| || || | ||| | | ||| Sbjct 17137 CCTGGTCGA----CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCG 17192 Query 214026 TTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATG 214082 || || ||| |||||||| || || || || ||||| | || | | | || | | Sbjct 17193 TTCGA-TGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTT 17251 Query 214083 GAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATG 214142 |||| || |||||||| || ||||||||||||||||||| | | | || || Sbjct 17252 GAGA--CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAA 17309 Query 214143 ATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG 214202 || || | || ||| || | | || | | |||||| || |||||| | Sbjct 17310 ATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGA 17369 Query 214203 GACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGC 214262 | | |||| |||||| || |||||| ||| ||| | | |||||| | || | ||| Sbjct 17370 GGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGG 17429 Query 214263 CTGTAGGTCTCCAGGAC 214279 |||||||||| | ||| Sbjct 17430 TTGTAGGTCTCGATGAC 17446 >seq1802 Length=45256 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || | || | |||||||||||||| ||||| || | | |||||||||||| Sbjct 28650 TGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCC 28709 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTC-AGGCCCATCTGTTCCAGCAG 47958 |||||| ||||||||||| | || || | || |||| ||| | |||| || Sbjct 28710 ATGAAGTCGAAGGGGTTGGAAGACTTGTAGA-CCTTGTCGTTGCCAAGAGCGACCAGAAG 28768 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | || || ||| |||||||||| | ||| | | || ||||||||| | || | Sbjct 28769 GCGGTCAGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGC 28828 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTC 48066 ||||| ||||| || || ||||| | ||| |||| ||||| || Sbjct 28829 GCAGGGCAGAGCCTCAGTCAGGAACTCTTGCTCAATCTTGACGGCATC 28876 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 |||||||||||| |||||| ||| || || ||| ||||||| ||||||||||| || Sbjct 29132 GCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAG 29191 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG 48236 ||| ||||||| || | || ||||||||||| || | || |||| Sbjct 29192 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCAAAAG 29238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931502362165760