Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq719 291 2e-73 seq1802 95.1 2e-14 >seq719 Length=48969 Score = 291 bits (322), Expect = 2e-73 Identities = 842/1278 (66%), Gaps = 47/1278 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGG 221475 ||||| ||||||||||||||||||||||||||| |||||||||| || | |||||| || Sbjct 16377 GTCAGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACG-GGCCTCAGG 16435 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||| ||||| || || | || | || || || ||||| || || | ||| Sbjct 16436 AGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACC 16495 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 ||||| | ||| | | ||||| | | || || || ||||| || |||||| || Sbjct 16496 AATGGGGCGGTGACGCATGTTGCTATTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATC 16555 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGG---TG 221652 || | ||||| | ||| || | ||| | | |||||| ||||||||| | Sbjct 16556 AATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTC 16615 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 || || ||||| | || || | || || || | | ||||||| | Sbjct 16616 ATAGA-CACCATC--------GTTGTAG------TCAACGAAGGTGGGCAGGGCAAGGGA 16660 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||| ||| || || || ||||| || | |||| |||||||| || ||||| Sbjct 16661 AGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGAG 16720 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || |||||| ||||||| || || || |||||| ||||| || ||||| Sbjct 16721 GTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTT 16780 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||||||||| ||||| ||||||||| ||||||| | || || | ||| || | Sbjct 16781 GTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAGCT- 16839 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTT---TTCATAC--CCGGTATAG 221947 ||||| || | ||||| ||||| | || ||| ||| | ||| | Sbjct 16840 TCTGGGCCTTGA--TAGTCTTGCG---ACCCTTGCCCTCGCGTTCGTACTTCTCGTACAA 16894 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 || | | |||| ||| ||||| || ||| ||| || ||| ||| ||||| Sbjct 16895 GGCCT--CGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATG 16952 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 || |||||| ||| | | ||| |||| |||||| || || |||||||| || || Sbjct 16953 AGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCG 17012 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || ||||| | | || ||||||| ||||| ||| || | || |||| ||| Sbjct 17013 AGGAAAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAAC 17072 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || || | || |||||||| ||||| || || | ||| | || || || ||||||||| Sbjct 17073 TCGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTG 17132 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 |||||||| || | | | ||| | |||||||| ||||| | || | | || Sbjct 17133 CCACCCTGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACC 17191 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA 222306 ||| ||| |||||||||||| |||||| | || || | || ||| | || Sbjct 17192 GTTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCAC---GGATACGGTGAGC 17248 Query 222307 CATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 || || || ||||| || || ||||||||||||||| ||||||| ||||| Sbjct 17249 GTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTA 17308 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 || ||||| |||||||| ||||| | || | || || || || |||| ||| | | Sbjct 17309 AATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTG 17368 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 | || || ||||| || || ||||| |||||| || ||| | || ||||| || Sbjct 17369 AGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAG 17428 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCA 222542 | ||| ||||| | ||| | ||| ||| || ||| || | | || || | || Sbjct 17429 GTTGTAGGTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAACA-CGCA 17487 Query 222543 TGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTT 222600 || ||||| ||| || ||||| || || | |||| |||||||| ||| | Sbjct 17488 TGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCT--TAAGCAGGTATGATCT 17545 Query 222601 TTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGC 222660 |||| |||||||| || ||||| | | || ||||| | | ||| || | ||| | Sbjct 17546 CTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGA 17605 Query 222661 GTCCAGCTCCGACTTGTG 222678 ||| ||||| |||||| Sbjct 17606 GTCGAGCTCTTCCTTGTG 17623 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 16085 GTTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGG 16144 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||||||||||| |||||| | ||| ||| || |||||||| || || Sbjct 16145 CTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAAC 16204 Query 221236 CAGCAGACTGTTGCGCA 221252 |||| ||||||||||| Sbjct 16205 GAGCAAACTGTTGCGCA 16221 >seq1802 Length=45256 Score = 95.1 bits (104), Expect = 2e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978 ||||| | ||||| ||||||||||||||||| || || ||||||||| ||| || Sbjct 29244 GCGGTGCTTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCT 29185 Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 | ||||||||||||||| | | || ||||| || |||| || ||||||||||| Sbjct 29184 TCTCCAACGAGCTCATCTCCCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCT 29130 Score = 86.0 bits (94), Expect = 1e-11 Identities = 175/258 (68%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||||||||| ||||||||||| Sbjct 29946 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 29887 Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| | | || ||| || | || || Sbjct 29886 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 29827 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || |||||||| || |||||||| || ||| | Sbjct 29826 CACATTCTTGCCTTCTTCGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCGC 29767 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| || | || || ||| | ||||| || |||||||| |||||||| || Sbjct 29766 TTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 29707 Query 25714 GAAAATGTGCACTCTGAG 25731 || || | ||||||||| Sbjct 29706 GAGAACATCCACTCTGAG 29689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928814449996160