Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq719 291 2e-73
seq1802 95.1 2e-14
>seq719
Length=48969
Score = 291 bits (322), Expect = 2e-73
Identities = 842/1278 (66%), Gaps = 47/1278 (4%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGG 221475
||||| ||||||||||||||||||||||||||| |||||||||| || | |||||| ||
Sbjct 16377 GTCAGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACG-GGCCTCAGG 16435
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
||| ||| ||||| || || | || | || || || ||||| || || | |||
Sbjct 16436 AGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACC 16495
Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595
||||| | ||| | | ||||| | | || || || ||||| || |||||| ||
Sbjct 16496 AATGGGGCGGTGACGCATGTTGCTATTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATC 16555
Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGG---TG 221652
|| | ||||| | ||| || | ||| | | |||||| ||||||||| |
Sbjct 16556 AATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTC 16615
Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712
|| || ||||| | || || | || || || | | ||||||| |
Sbjct 16616 ATAGA-CACCATC--------GTTGTAG------TCAACGAAGGTGGGCAGGGCAAGGGA 16660
Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772
|||| ||| || || || ||||| || | |||| |||||||| || |||||
Sbjct 16661 AGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGAG 16720
Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832
|||| || |||||| ||||||| || || || |||||| ||||| || |||||
Sbjct 16721 GTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTT 16780
Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892
||||||||| ||||| ||||||||| ||||||| | || || | ||| || |
Sbjct 16781 GTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAGCT- 16839
Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTT---TTCATAC--CCGGTATAG 221947
||||| || | ||||| ||||| | || ||| ||| | ||| |
Sbjct 16840 TCTGGGCCTTGA--TAGTCTTGCG---ACCCTTGCCCTCGCGTTCGTACTTCTCGTACAA 16894
Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007
|| | | |||| ||| ||||| || ||| ||| || ||| ||| |||||
Sbjct 16895 GGCCT--CGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATG 16952
Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067
|| |||||| ||| | | ||| |||| |||||| || || |||||||| || ||
Sbjct 16953 AGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCG 17012
Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127
| || ||||| | | || ||||||| ||||| ||| || | || |||| |||
Sbjct 17013 AGGAAAAGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAAC 17072
Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187
|| || | || |||||||| ||||| || || | ||| | || || || |||||||||
Sbjct 17073 TCGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTG 17132
Query 222188 CCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246
|||||||| || | | | ||| | |||||||| ||||| | || | | ||
Sbjct 17133 CCACCCTGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACC 17191
Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA 222306
||| ||| |||||||||||| |||||| | || || | || ||| | ||
Sbjct 17192 GTTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCAC---GGATACGGTGAGC 17248
Query 222307 CATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363
|| || || ||||| || || ||||||||||||||| ||||||| |||||
Sbjct 17249 GTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTA 17308
Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423
|| ||||| |||||||| ||||| | || | || || || || |||| ||| | |
Sbjct 17309 AATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTG 17368
Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483
| || || ||||| || || ||||| |||||| || ||| | || ||||| ||
Sbjct 17369 AGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAG 17428
Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCA 222542
| ||| ||||| | ||| | ||| ||| || ||| || | | || || | ||
Sbjct 17429 GTTGTAGGTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAACA-CGCA 17487
Query 222543 TGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTT 222600
|| ||||| ||| || ||||| || || | |||| |||||||| ||| |
Sbjct 17488 TGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCT--TAAGCAGGTATGATCT 17545
Query 222601 TTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGC 222660
|||| |||||||| || ||||| | | || ||||| | | ||| || | ||| |
Sbjct 17546 CTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGA 17605
Query 222661 GTCCAGCTCCGACTTGTG 222678
||| ||||| ||||||
Sbjct 17606 GTCGAGCTCTTCCTTGTG 17623
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | |||||| | ||| || ||| | ||
Sbjct 16085 GTTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGG 16144
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || |||||||||||||| |||||| | ||| ||| || |||||||| || ||
Sbjct 16145 CTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAAC 16204
Query 221236 CAGCAGACTGTTGCGCA 221252
|||| |||||||||||
Sbjct 16205 GAGCAAACTGTTGCGCA 16221
>seq1802
Length=45256
Score = 95.1 bits (104), Expect = 2e-14
Identities = 90/115 (78%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978
||||| | ||||| ||||||||||||||||| || || ||||||||| ||| ||
Sbjct 29244 GCGGTGCTTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCT 29185
Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033
| ||||||||||||||| | | || ||||| || |||| || |||||||||||
Sbjct 29184 TCTCCAACGAGCTCATCTCCCGTGATGAGGGCCTGCACACCGACTTTGCCTGCCT 29130
Score = 86.0 bits (94), Expect = 1e-11
Identities = 175/258 (68%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| | || |||||||||||| |||||||||||
Sbjct 29946 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 29887
Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593
||||||| | ||| |||| || | ||| | | || ||| || | || ||
Sbjct 29886 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 29827
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || ||||| || || || |||||||| || |||||||| || ||| |
Sbjct 29826 CACATTCTTGCCTTCTTCGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCGC 29767
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
||| || | || || ||| | ||||| || |||||||| |||||||| ||
Sbjct 29766 TTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 29707
Query 25714 GAAAATGTGCACTCTGAG 25731
|| || | |||||||||
Sbjct 29706 GAGAACATCCACTCTGAG 29689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928814449996160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |