Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq719 156 5e-33
>seq719
Length=48969
Score = 156 bits (172), Expect = 5e-33
Identities = 898/1413 (64%), Gaps = 67/1413 (5%)
Strand=Plus/Minus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| ||||||| || ||| |||||||| || || || | || ||||
Sbjct 17503 CCTCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGTGTC 17444
Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329
| ||||| ||| || |||||| |||| | | ||| ||||| | || || ||||
Sbjct 17443 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCCCCACACTCT 17386
Query 75330 TCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388
|||| |||||||| || || | ||| |||| |||||||| ||| || |||||
Sbjct 17385 TCAACGCTGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAA 17327
Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448
||||| || | ||||| || | || || | | || || ||||| ||| ||||
Sbjct 17326 GACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCT 17267
Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508
|| || ||||| | || || | | | || | | || ||| || ||
Sbjct 17266 GGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCTACTGGCTCCTACATTGCCGGCACC 17207
Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568
|| ||| ||| | ||| | ||||| |||||||| || || ||| ||| || |||||
Sbjct 17206 AACGGTACATCGAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTAC 17147
Query 75569 GTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622
|| | || | || ||||| || || |||| | ||| | || || |||
Sbjct 17146 GTCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAGCCCTGG 17090
Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682
|| |||||| || | |||||| | || || || ||||| || | || |||| || |
Sbjct 17089 CACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGG-TCCG 17031
Query 75683 TG-TAGAGATCTCTTTTCATCCCTGT--GGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739
|| | | ||||| |||| || || | |||| || || || ||||||||| | || |||
Sbjct 17030 TGCTCGCGATCT--TTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAG 16973
Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799
|| | | ||| | || | || || | || || || | | |||
Sbjct 16972 AAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTGCTAC 16913
Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA---GAGG---AGGGTAGAGCCAAT 75853
|| || ||||| || ||| | ||| ||||| ||| |||| ||||| | |||
Sbjct 16912 GGCGAAGAGTTCGAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTCG---CAA- 16857
Query 75854 GCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912
|||| | | || | | || | ||||| | || || || | | ||||| ||||||||
Sbjct 16856 --GACTAT-CAAGGCCCAGAAGCTTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGG 16800
Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972
| || | ||||| ||||||||||| ||| ||||| ||||| ||||| ||||
Sbjct 16799 CAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTGGG 16740
Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032
||| ||| ||||| || || ||||| || || | |||||| | | ||||||
Sbjct 16739 AACCATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGT 16680
Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCAC 76092
||||| ||||| ||||| || | ||||| || | | || | | | | |
Sbjct 16679 CGCTGTCTGCAACTTGGCTTCCCTTGCCCTGCCCACCTTCGTTGACTACAACGATGGTGT 16620
Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAG---ATTGTTACCAAAAATCTAAACCG 76149
| ||| | | || ||||| || |||| || ||||| ||| || | |
Sbjct 16619 CTATGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAA----CTTGAACA 16564
Query 76150 AG-TCATTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGAC 76205
|| ||||||| || || |||||| ||| || ||| | || || ||||| |
Sbjct 16563 AGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCT-CGCAATAG--CAACATGCGTC 16507
Query 76206 ACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG 76265
|| | || |||||| | ||||| || ||||| || |||| ||| | | || ||
Sbjct 16506 ACCGCCCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATG-----CTTTCCTCGCCCTTCG 16452
Query 76266 CA-----TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTA 76320
|| || || || ||| ||| || | || |||||||| ||||| ||
Sbjct 16451 CATGCCTTTCGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTTGAGACCATCTA 16392
Query 76321 TCACGCATCCCTG--GAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACA 76378
||||| | ||| | | || | | |||| | | | || |||| ||
Sbjct 16391 CCACGCTGCTCTGACCATGTCCGT--TCAGCTGGCCAAGGAGGAGGGCACCTACTCCACG 16334
Query 76379 TTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC 76438
| ||||| || || ||||| || | ||||||| || |||| |||| || || ||
Sbjct 16333 TACGAGGGCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGT-GGAATGTCAAGCC 16275
Query 76439 AAGCTCAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTA 76496
|| | | | ||||||||| ||| ||||| | ||||||||| | ||| | || |
Sbjct 16274 -CTCTGATCTTTGGGACTGGGATTCTCTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCA 16216
Query 76497 ACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATG 76556
||||| | | | || || ||||| || |||||||| | || |||||||| || || |
Sbjct 16215 ACAGTTTGCTCGTTGCCCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACG 16156
Query 76557 AATGCTTTGAACCATACACAACAAACATCTACC 76589
| ||||| || || ||||| | ||||||||||
Sbjct 16155 AGTGCTTCGAGCCCTACACCTCCAACATCTACC 16123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596550107088320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |