Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq719 156 5e-33 >seq719 Length=48969 Score = 156 bits (172), Expect = 5e-33 Identities = 898/1413 (64%), Gaps = 67/1413 (5%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || ||| |||||||| || || || | || |||| Sbjct 17503 CCTCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGTGTC 17444 Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||| ||| || |||||| |||| | | ||| ||||| | || || |||| Sbjct 17443 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCCCCACACTCT 17386 Query 75330 TCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 |||| |||||||| || || | ||| |||| |||||||| ||| || ||||| Sbjct 17385 TCAACGCTGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAA 17327 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||||| || | ||||| || | || || | | || || ||||| ||| |||| Sbjct 17326 GACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCT 17267 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || || ||||| | || || | | | || | | || ||| || || Sbjct 17266 GGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCTACTGGCTCCTACATTGCCGGCACC 17207 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || ||| ||| | ||| | ||||| |||||||| || || ||| ||| || ||||| Sbjct 17206 AACGGTACATCGAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTAC 17147 Query 75569 GTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || | || | || ||||| || || |||| | ||| | || || ||| Sbjct 17146 GTCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAGCCCTGG 17090 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || |||||| || | |||||| | || || || ||||| || | || |||| || | Sbjct 17089 CACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGG-TCCG 17031 Query 75683 TG-TAGAGATCTCTTTTCATCCCTGT--GGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | ||||| |||| || || | |||| || || || ||||||||| | || ||| Sbjct 17030 TGCTCGCGATCT--TTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAG 16973 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || | | ||| | || | || || | || || || | | ||| Sbjct 16972 AAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTGCTAC 16913 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA---GAGG---AGGGTAGAGCCAAT 75853 || || ||||| || ||| | ||| ||||| ||| |||| ||||| | ||| Sbjct 16912 GGCGAAGAGTTCGAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTCG---CAA- 16857 Query 75854 GCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 |||| | | || | | || | ||||| | || || || | | ||||| |||||||| Sbjct 16856 --GACTAT-CAAGGCCCAGAAGCTTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGG 16800 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 | || | ||||| ||||||||||| ||| ||||| ||||| ||||| |||| Sbjct 16799 CAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTGGG 16740 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032 ||| ||| ||||| || || ||||| || || | |||||| | | |||||| Sbjct 16739 AACCATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGT 16680 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCAC 76092 ||||| ||||| ||||| || | ||||| || | | || | | | | | Sbjct 16679 CGCTGTCTGCAACTTGGCTTCCCTTGCCCTGCCCACCTTCGTTGACTACAACGATGGTGT 16620 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAG---ATTGTTACCAAAAATCTAAACCG 76149 | ||| | | || ||||| || |||| || ||||| ||| || | | Sbjct 16619 CTATGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAA----CTTGAACA 16564 Query 76150 AG-TCATTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGAC 76205 || ||||||| || || |||||| ||| || ||| | || || ||||| | Sbjct 16563 AGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCT-CGCAATAG--CAACATGCGTC 16507 Query 76206 ACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG 76265 || | || |||||| | ||||| || ||||| || |||| ||| | | || || Sbjct 16506 ACCGCCCCATTGGTCTTGGTGTCCAGGGTCTTGCTGATG-----CTTTCCTCGCCCTTCG 16452 Query 76266 CA-----TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTA 76320 || || || || ||| ||| || | || |||||||| ||||| || Sbjct 16451 CATGCCTTTCGAGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTTGAGACCATCTA 16392 Query 76321 TCACGCATCCCTG--GAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACA 76378 ||||| | ||| | | || | | |||| | | | || |||| || Sbjct 16391 CCACGCTGCTCTGACCATGTCCGT--TCAGCTGGCCAAGGAGGAGGGCACCTACTCCACG 16334 Query 76379 TTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC 76438 | ||||| || || ||||| || | ||||||| || |||| |||| || || || Sbjct 16333 TACGAGGGCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGT-GGAATGTCAAGCC 16275 Query 76439 AAGCTCAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTA 76496 || | | | ||||||||| ||| ||||| | ||||||||| | ||| | || | Sbjct 16274 -CTCTGATCTTTGGGACTGGGATTCTCTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCA 16216 Query 76497 ACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATG 76556 ||||| | | | || || ||||| || |||||||| | || |||||||| || || | Sbjct 16215 ACAGTTTGCTCGTTGCCCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACG 16156 Query 76557 AATGCTTTGAACCATACACAACAAACATCTACC 76589 | ||||| || || ||||| | |||||||||| Sbjct 16155 AGTGCTTCGAGCCCTACACCTCCAACATCTACC 16123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550107088320