Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq995 123 7e-23
seq719 95.1 4e-14
>seq995
Length=74854
Score = 123 bits (136), Expect = 7e-23
Identities = 186/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||||||||| || ||||| ||| | || || ||||| ||||| || |
Sbjct 21940 CTTGACAAGACGACGCTGGATGTAACCGGTTTCGGCAGTCTTGACAGCGGTATCGATCAA 21999
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701
||| | | |||| |||| || |||||||| | || || ||| || || | | |
Sbjct 22000 ACCTTCTCTACCAGCCATGGCGTGGAAGAAGAATTCACTAGG-CGTGAGACCACGGAGAT 22058
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
| ||| |||||||||||||||| |||||||| || | ||| ||| || || || ||||
Sbjct 22059 AAGAGTTCTCAACGAAACCACGAGCCTCGGGTGAGTAGTCATCCTTTGTGAAATGCGGCA 22118
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
||| | || || ||||| | || || |||||||| || ||| | |||||||| |
Sbjct 22119 AGGTGCGGTACTTGAAGCCGAAAGGAATGCGCTTTCCTTCGACGATTTGCTGTCCGACCA 22178
Query 302822 ACGAAATCATCTGCGAAATATT 302843
| | | ||||||| ||||| ||
Sbjct 22179 AGGCAGTCATCTGGGAAATGTT 22200
Score = 84.2 bits (92), Expect = 6e-11
Identities = 103/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || ||||| | || ||||| |||||| | ||||||||
Sbjct 21149 AGAATTTCCTTGAGACGAGGGACACCGAGAGTGACGTT---CTTGGAAGAGACACCAGCG 21205
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| |||||||||||||| || | || || | |||||||| ||| || ||||| ||
Sbjct 21206 AAATGGAAAGTATTCAGTGTCATCTGCGTGGCAGGCTCACCGATAGACTGGGCCGCGATG 21265
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||||||||| || || ||
Sbjct 21266 ACACCAACCATCTCACCAGG 21285
>seq719
Length=48969
Score = 95.1 bits (104), Expect = 4e-14
Identities = 448/707 (63%), Gaps = 11/707 (2%)
Strand=Plus/Plus
Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685
||| ||| || | |||||| ||| ||||| || || |||||| || | |||||||
Sbjct 16693 CGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCT 16752
Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745
|||| || | ||| ||||||||||| || ||| | ||| | || ||||| |||
Sbjct 16753 GGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCT 16812
Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805
| || || || || ||| || | |||| || || |||| |||| |
Sbjct 16813 GAGCCTCAAGGATGGCATACCAAAGCTTCTGGGCCTTGATAGTCTTGCGACCCTTGCCCT 16872
Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865
| || || ||| |||| | | | || || ||||| || ||| || ||||
Sbjct 16873 CGCGTTCGTACTTCTCGTACAAGGCCTCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAG 16932
Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAA 155922
|||||| || |||||| | || | ||| || || ||| | | || ||| |
Sbjct 16933 GGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACT---CTCTTCATGA 16989
Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGT 155982
| | ||| ||| | ||| |||||| || | || |||||| | |||||
Sbjct 16990 ACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCGCGAGCACGGACCTCCTCCTTGCCGT 17049
Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042
| ||||| || | || | ||| || | ||| | || ||||| || || || |
Sbjct 17050 GGTTCTTGCGCAAGTCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGG 17109
Query 156043 CAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099
| || |||| | |||| |||||||| || || || |||||||| || |||||||
Sbjct 17110 CGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGA 17169
Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159
||| ||||| ||||| | ||| || || || || ||||| ||| ||| | || ||||
Sbjct 17170 CACGAAGCATGGGAATGACACCGTTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAG 17229
Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCG 156218
| || | | ||| | || ||||| ||||| | |||| || || || |||
Sbjct 17230 TAGCACGGATACGGTGAGCGTTGAGACCAATGCCACCAG-CCATCTTGGAGATCATGGCG 17288
Query 156219 CATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAG 156278
|| ||| | || | | ||||||| |||||||| || || | ||| | || ||
Sbjct 17289 CAGGTCTTGAGGGTGTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAG 17348
Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325
|| ||| | || | || || ||||||||||| ||||| ||
Sbjct 17349 CATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGG 17395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471768306068918
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |