Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq995 123 7e-23 seq719 95.1 4e-14 >seq995 Length=74854 Score = 123 bits (136), Expect = 7e-23 Identities = 186/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || ||||| ||| | || || ||||| ||||| || | Sbjct 21940 CTTGACAAGACGACGCTGGATGTAACCGGTTTCGGCAGTCTTGACAGCGGTATCGATCAA 21999 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| | | |||| |||| || |||||||| | || || ||| || || | | | Sbjct 22000 ACCTTCTCTACCAGCCATGGCGTGGAAGAAGAATTCACTAGG-CGTGAGACCACGGAGAT 22058 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| |||||||||||||||| |||||||| || | ||| ||| || || || |||| Sbjct 22059 AAGAGTTCTCAACGAAACCACGAGCCTCGGGTGAGTAGTCATCCTTTGTGAAATGCGGCA 22118 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 ||| | || || ||||| | || || |||||||| || ||| | |||||||| | Sbjct 22119 AGGTGCGGTACTTGAAGCCGAAAGGAATGCGCTTTCCTTCGACGATTTGCTGTCCGACCA 22178 Query 302822 ACGAAATCATCTGCGAAATATT 302843 | | | ||||||| ||||| || Sbjct 22179 AGGCAGTCATCTGGGAAATGTT 22200 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| | || ||||| |||||| | |||||||| Sbjct 21149 AGAATTTCCTTGAGACGAGGGACACCGAGAGTGACGTT---CTTGGAAGAGACACCAGCG 21205 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||||||||| || | || || | |||||||| ||| || ||||| || Sbjct 21206 AAATGGAAAGTATTCAGTGTCATCTGCGTGGCAGGCTCACCGATAGACTGGGCCGCGATG 21265 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||||||||| || || || Sbjct 21266 ACACCAACCATCTCACCAGG 21285 >seq719 Length=48969 Score = 95.1 bits (104), Expect = 4e-14 Identities = 448/707 (63%), Gaps = 11/707 (2%) Strand=Plus/Plus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | |||||| ||| ||||| || || |||||| || | ||||||| Sbjct 16693 CGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCT 16752 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || | ||| ||||||||||| || ||| | ||| | || ||||| ||| Sbjct 16753 GGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCT 16812 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || || || ||| || | |||| || || |||| |||| | Sbjct 16813 GAGCCTCAAGGATGGCATACCAAAGCTTCTGGGCCTTGATAGTCTTGCGACCCTTGCCCT 16872 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 | || || ||| |||| | | | || || ||||| || ||| || |||| Sbjct 16873 CGCGTTCGTACTTCTCGTACAAGGCCTCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAG 16932 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAA 155922 |||||| || |||||| | || | ||| || || ||| | | || ||| | Sbjct 16933 GGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACT---CTCTTCATGA 16989 Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGT 155982 | | ||| ||| | ||| |||||| || | || |||||| | ||||| Sbjct 16990 ACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCGCGAGCACGGACCTCCTCCTTGCCGT 17049 Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042 | ||||| || | || | ||| || | ||| | || ||||| || || || | Sbjct 17050 GGTTCTTGCGCAAGTCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGG 17109 Query 156043 CAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099 | || |||| | |||| |||||||| || || || |||||||| || ||||||| Sbjct 17110 CGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGA 17169 Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159 ||| ||||| ||||| | ||| || || || || ||||| ||| ||| | || |||| Sbjct 17170 CACGAAGCATGGGAATGACACCGTTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAG 17229 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCG 156218 | || | | ||| | || ||||| ||||| | |||| || || || ||| Sbjct 17230 TAGCACGGATACGGTGAGCGTTGAGACCAATGCCACCAG-CCATCTTGGAGATCATGGCG 17288 Query 156219 CATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAG 156278 || ||| | || | | ||||||| |||||||| || || | ||| | || || Sbjct 17289 CAGGTCTTGAGGGTGTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAG 17348 Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 || ||| | || | || || ||||||||||| ||||| || Sbjct 17349 CATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGG 17395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471768306068918