Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq816 176 6e-38 seq719 165 1e-34 seq1510 136 5e-26 seq1802 123 3e-22 seq519 114 2e-19 seq657 96.9 4e-14 seq1137 95.1 1e-13 >seq816 Length=13690 Score = 176 bits (194), Expect = 6e-38 Identities = 272/389 (70%), Gaps = 6/389 (2%) Strand=Plus/Minus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||||||| ||| |||| ||||| ||||| ||||| | Sbjct 478 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATTGTCGATGGCGTCCCGCCCGGCATGGCT 419 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 ||| | ||| |||| |||||||||||| || | || || || || |||||| || || || Sbjct 418 CTGACAGAGTCCGATATCCAGCCTCAGCTGAACCGCCGTCGCCCCGGCCAGAGCTCAATT 359 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | ||||| | |||||| || |||||| |||||||| || || ||| ||| || Sbjct 358 ACGACGCCTAGAAACGAGAAGGACCGCGTCGTCATCCAGAGCGGTACCGAGTTCGGTGTC 299 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339 || |||||| | || | ||| | | || ||| ||||| || ||| ||||| Sbjct 298 ACCCTCGGCACCCCGATTGGCATGCTCGTCCAGAACGAGGACCAACGTCCCAAGGACTAC 239 Query 18340 TCCGAC------ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | || ||| || | | || || || || |||||||| | |||||| | | Sbjct 238 GGCAACTCTACGATGGACATGTTCCCCCGCCCGTCCCACGCCGATTGGACCTACCTCGAG 179 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 || |||||| | ||||| || || || || ||||| || || ||||||||||| | Sbjct 178 AAATACGGCGTTAAGGCCTCCTCCGGTGGTGGCCGCTCCTCAGCCCGCGAGACAATTGCC 119 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 ||||||||||||||||| | |||||||| Sbjct 118 CGCGTCGCCGCCGGCGCCCTTGCCGAGAA 90 >seq719 Length=48969 Score = 165 bits (182), Expect = 1e-34 Identities = 329/489 (67%), Gaps = 15/489 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| ||||| || |||||||| | || ||||| || Sbjct 17138 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGA 17197 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||||| ||| | || || | ||| ||| | || Sbjct 17198 TGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGACC 17257 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || ||| ||||||||| | ||||| ||||| |||||||| || ||||| Sbjct 17258 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 17317 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| |||||||||| ||||| ||||| || || || || | || || Sbjct 17318 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 17377 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || |||||| |||| | |||||| || |||||| Sbjct 17378 AGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 17437 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| || ||| || |||| || || || ||||| || || Sbjct 17438 CTCGATGACACGC------------TCGACGTTATCA---CCCCAGATGCCGACTGCAAC 17482 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| ||| || | |||| | | |||| | ||| |||||| || Sbjct 17483 ACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAGGTATGA 17542 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || |||| ||| ||| ||||| || || |||||||||| | ||||| Sbjct 17543 TCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGC 17602 Query 1630545 GGCGTCGAG 1630553 | |||||| Sbjct 17603 AGAGTCGAG 17611 >seq1510 Length=33207 Score = 136 bits (150), Expect = 5e-26 Identities = 93/105 (89%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| |||||||||||||| ||||| | || || ||| | || || ||||||| Sbjct 20311 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGTAAGACCGTCGCTAACATGA 20370 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 20371 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTCAACATCA 20415 >seq1802 Length=45256 Score = 123 bits (136), Expect = 3e-22 Identities = 175/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| ||| || |||||||||||||| | || ||||| Sbjct 28644 GCCTTTTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATG 28703 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | ||||||| ||| ||| || |||||| Sbjct 28704 TTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGA-- 28761 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | || |||||||| || || |||||||||||||| ||| | | || ||||||||||| Sbjct 28762 CCAGAAGGCGGTCAGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGA 28821 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || ||||| | ||| ||| ||||||| ||| |||| |||||| || || | Sbjct 28822 GAAGAGCGCAGGGCAGAGCCTCAGTCAGGAACTCTTGCTCAATCTTGACGGCATCAACAA 28881 Query 868929 TGAT 868932 |||| Sbjct 28882 TGAT 28885 >seq519 Length=37039 Score = 114 bits (126), Expect = 2e-19 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 || |||||||| ||||| || || || ||||| |||||| ||| | | |||||| Sbjct 138 GACGACAGCATTGGCGGAACCGTCACCTGCGTCATCCGCAACCCGCCCTCGGCGCTCGGC 197 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| |||||||| |||| || ||||| ||||| ||||| ||| Sbjct 198 GAGCCCTGCTTCGACAAGCTCGAGGCCTCGCTTGCACACGCTATGCTCAGCATCCCCGCC 257 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT-GCGGGTGCG 19202 || ||||| || ||||| ||| ||| ||| |||| |||| Sbjct 258 ACAAAGGGCTTTGAGATCGGCTCCGGCTTTGGCGGCTGCG 297 >seq657 Length=61752 Score = 96.9 bits (106), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439 ||||| ||| || ||||| ||||||| || | || || ||| | ||||| || Sbjct 3810 CCGGTGCTGCCGAATCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCGACGACCTCGACG 3751 Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499 |||||| | || ||||||| | |||||||||||| ||||||| | | Sbjct 3750 ACCTCGGGAGTGAAGATGCGCTCGATGATGAGCTGGGCGATGCGG---TCGCCCTCGGCG 3694 Query 1572500 ACGTG---GTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCG 1572556 || | ||| | ||||| |||||||||||| | ||| |||| |||||| |||||| Sbjct 3693 ACCTCAAAGTCAGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTCG 3634 Query 1572557 GCATCGATGACGCCTGCGCCGACGTCGATG 1572586 || ||||||||||| |||||| ||||||| Sbjct 3633 GCGTCGATGACGCCGGCGCCGGTGTCGATG 3604 >seq1137 Length=10255 Score = 95.1 bits (104), Expect = 1e-13 Identities = 248/364 (68%), Gaps = 17/364 (5%) Strand=Plus/Plus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||||||||||| | |||||||| || || |||| | | | ||||||||||||||||||| Sbjct 9691 GGCGGCGGCGCCAATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 9749 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||||||||| | |||| || || |||| Sbjct 9750 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGATTCCGTGGTGC 9809 Query 1726812 GCGCGCCCACGGCGCCCCACGCC-ACCAGGTCTGCCA--AATAAGGGGCCACCAGAG-GA 1726867 | || || | ||| || || | | | ||| || | || |||| ||| | Sbjct 9810 GGGCACCGATGGCACCA-ACACTGATAAAGTCGGCGAGGAACTGGGGGG----AGATTGT 9864 Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGC-GACGACGAGATCGCGCAACAGGC 1726925 | ||| | |||| || | |||| || | |||| | || ||||||| || || Sbjct 9865 GTCGAGCATCTCGCTAGCGATGGGC--AT-GCCGGCAGTCGTA-AGATCGCTGAAAAGCT 9920 Query 1726926 GGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGG 1726985 |||| || |||||| | | | | | | ||||| ||| |||||| || Sbjct 9921 GGCGAGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGA 9980 Query 1726986 CCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGC 1727045 ||||||||||| |||||||| ||||||||||| |||| ||||||||||||| |||| Sbjct 9981 TGAGGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGATGACGC 10040 Query 1727046 AAAG 1727049 | || Sbjct 10041 AGAG 10044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106924682918638