Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq816 176 6e-38
seq719 165 1e-34
seq1510 136 5e-26
seq1802 123 3e-22
seq519 114 2e-19
seq657 96.9 4e-14
seq1137 95.1 1e-13
>seq816
Length=13690
Score = 176 bits (194), Expect = 6e-38
Identities = 272/389 (70%), Gaps = 6/389 (2%)
Strand=Plus/Minus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||||||| ||| |||| ||||| ||||| ||||| |
Sbjct 478 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATTGTCGATGGCGTCCCGCCCGGCATGGCT 419
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
||| | ||| |||| |||||||||||| || | || || || || |||||| || || ||
Sbjct 418 CTGACAGAGTCCGATATCCAGCCTCAGCTGAACCGCCGTCGCCCCGGCCAGAGCTCAATT 359
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| ||||| | |||||| || |||||| |||||||| || || ||| ||| ||
Sbjct 358 ACGACGCCTAGAAACGAGAAGGACCGCGTCGTCATCCAGAGCGGTACCGAGTTCGGTGTC 299
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339
|| |||||| | || | ||| | | || ||| ||||| || ||| |||||
Sbjct 298 ACCCTCGGCACCCCGATTGGCATGCTCGTCCAGAACGAGGACCAACGTCCCAAGGACTAC 239
Query 18340 TCCGAC------ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| || ||| || | | || || || || |||||||| | |||||| | |
Sbjct 238 GGCAACTCTACGATGGACATGTTCCCCCGCCCGTCCCACGCCGATTGGACCTACCTCGAG 179
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
|| |||||| | ||||| || || || || ||||| || || ||||||||||| |
Sbjct 178 AAATACGGCGTTAAGGCCTCCTCCGGTGGTGGCCGCTCCTCAGCCCGCGAGACAATTGCC 119
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
||||||||||||||||| | ||||||||
Sbjct 118 CGCGTCGCCGCCGGCGCCCTTGCCGAGAA 90
>seq719
Length=48969
Score = 165 bits (182), Expect = 1e-34
Identities = 329/489 (67%), Gaps = 15/489 (3%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| ||||| || |||||||| | || ||||| ||
Sbjct 17138 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGA 17197
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| || | ||||| ||| | || || | ||| ||| | ||
Sbjct 17198 TGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGACC 17257
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| || ||| ||||||||| | ||||| ||||| |||||||| || |||||
Sbjct 17258 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 17317
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||||| |||||||||| ||||| ||||| || || || || | || ||
Sbjct 17318 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 17377
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| ||||| | || |||||| |||| | |||||| || ||||||
Sbjct 17378 AGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 17437
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| || ||| || |||| || || || ||||| || ||
Sbjct 17438 CTCGATGACACGC------------TCGACGTTATCA---CCCCAGATGCCGACTGCAAC 17482
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| ||| || | |||| | | |||| | ||| |||||| ||
Sbjct 17483 ACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAGGTATGA 17542
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
| || |||| ||| ||| ||||| || || |||||||||| | |||||
Sbjct 17543 TCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGC 17602
Query 1630545 GGCGTCGAG 1630553
| ||||||
Sbjct 17603 AGAGTCGAG 17611
>seq1510
Length=33207
Score = 136 bits (150), Expect = 5e-26
Identities = 93/105 (89%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| |||||||||||||| ||||| | || || ||| | || || |||||||
Sbjct 20311 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGTAAGACCGTCGCTAACATGA 20370
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 20371 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTCAACATCA 20415
>seq1802
Length=45256
Score = 123 bits (136), Expect = 3e-22
Identities = 175/244 (72%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| ||| || |||||||||||||| | || |||||
Sbjct 28644 GCCTTTTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATG 28703
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | ||| ||||||| | ||||||| ||| ||| || ||||||
Sbjct 28704 TTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGA-- 28761
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
| || |||||||| || || |||||||||||||| ||| | | || |||||||||||
Sbjct 28762 CCAGAAGGCGGTCAGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGA 28821
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|| || ||||| | ||| ||| ||||||| ||| |||| |||||| || || |
Sbjct 28822 GAAGAGCGCAGGGCAGAGCCTCAGTCAGGAACTCTTGCTCAATCTTGACGGCATCAACAA 28881
Query 868929 TGAT 868932
||||
Sbjct 28882 TGAT 28885
>seq519
Length=37039
Score = 114 bits (126), Expect = 2e-19
Identities = 122/160 (76%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
|| |||||||| ||||| || || || ||||| |||||| ||| | | ||||||
Sbjct 138 GACGACAGCATTGGCGGAACCGTCACCTGCGTCATCCGCAACCCGCCCTCGGCGCTCGGC 197
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| ||||| |||||| |||||||| |||| || ||||| ||||| ||||| |||
Sbjct 198 GAGCCCTGCTTCGACAAGCTCGAGGCCTCGCTTGCACACGCTATGCTCAGCATCCCCGCC 257
Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT-GCGGGTGCG 19202
|| ||||| || ||||| ||| ||| ||| |||| ||||
Sbjct 258 ACAAAGGGCTTTGAGATCGGCTCCGGCTTTGGCGGCTGCG 297
>seq657
Length=61752
Score = 96.9 bits (106), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439
||||| ||| || ||||| ||||||| || | || || ||| | ||||| ||
Sbjct 3810 CCGGTGCTGCCGAATCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCGACGACCTCGACG 3751
Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499
|||||| | || ||||||| | |||||||||||| ||||||| | |
Sbjct 3750 ACCTCGGGAGTGAAGATGCGCTCGATGATGAGCTGGGCGATGCGG---TCGCCCTCGGCG 3694
Query 1572500 ACGTG---GTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCG 1572556
|| | ||| | ||||| |||||||||||| | ||| |||| |||||| ||||||
Sbjct 3693 ACCTCAAAGTCAGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTCG 3634
Query 1572557 GCATCGATGACGCCTGCGCCGACGTCGATG 1572586
|| ||||||||||| |||||| |||||||
Sbjct 3633 GCGTCGATGACGCCGGCGCCGGTGTCGATG 3604
>seq1137
Length=10255
Score = 95.1 bits (104), Expect = 1e-13
Identities = 248/364 (68%), Gaps = 17/364 (5%)
Strand=Plus/Plus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||||||||||| | |||||||| || || |||| | | | |||||||||||||||||||
Sbjct 9691 GGCGGCGGCGCCAATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 9749
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||||| || | | ||| | || || | ||||||||| | |||| || || ||||
Sbjct 9750 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGATTCCGTGGTGC 9809
Query 1726812 GCGCGCCCACGGCGCCCCACGCC-ACCAGGTCTGCCA--AATAAGGGGCCACCAGAG-GA 1726867
| || || | ||| || || | | | ||| || | || |||| ||| |
Sbjct 9810 GGGCACCGATGGCACCA-ACACTGATAAAGTCGGCGAGGAACTGGGGGG----AGATTGT 9864
Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGC-GACGACGAGATCGCGCAACAGGC 1726925
| ||| | |||| || | |||| || | |||| | || ||||||| || ||
Sbjct 9865 GTCGAGCATCTCGCTAGCGATGGGC--AT-GCCGGCAGTCGTA-AGATCGCTGAAAAGCT 9920
Query 1726926 GGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGG 1726985
|||| || |||||| | | | | | | ||||| ||| |||||| ||
Sbjct 9921 GGCGAGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGA 9980
Query 1726986 CCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGC 1727045
||||||||||| |||||||| ||||||||||| |||| ||||||||||||| ||||
Sbjct 9981 TGAGGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGATGACGC 10040
Query 1727046 AAAG 1727049
| ||
Sbjct 10041 AGAG 10044
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106924682918638
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