Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1510 131 3e-24 seq719 125 1e-22 seq1802 104 4e-16 >seq1510 Length=33207 Score = 131 bits (144), Expect = 3e-24 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| ||||||||||| |||||||| | || || |||||||| || ||| | | Sbjct 20311 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGTAAGACCGTCGCTAACATGA 20370 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 |||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 20371 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTCAACATCA 20415 >seq719 Length=48969 Score = 125 bits (138), Expect = 1e-22 Identities = 330/504 (65%), Gaps = 21/504 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| ||||| || |||||||| | | ||||| || Sbjct 17138 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGA 17197 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||||| ||| | || || | ||| ||| | || Sbjct 17198 TGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGACC 17257 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || ||| ||||||||| | ||||| | || || || ||||| || ||||| Sbjct 17258 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 17317 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGT 2073776 || ||||| |||||||||| | || ||||| || || || ||| | | || Sbjct 17318 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGA---CAGCTGGCACTGAGGGGT 17374 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 || || |||||||| ||||| | || ||| | ||| ||||||| | ||| Sbjct 17375 ACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTA 17434 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 ||| ||| || ||| | ||||| || || || ||||| || Sbjct 17435 GGTCTCGATGACACGC------------TCGACGTTATCA---CCCCAGATGCCGACTGC 17479 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTA 2073956 || ||||||||||||| ||| |||| |||| | | | || | ||| |||||| Sbjct 17480 AACACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAGGTA 17539 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 || | || |||| | ||| ||||| |||| | |||||| |||| | || Sbjct 17540 TGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAAT 17599 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||| | |||||| | |||||||| Sbjct 17600 GGCAGAGTCGAGCTCTTCCTTGTG 17623 >seq1802 Length=45256 Score = 104 bits (114), Expect = 4e-16 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||| | || ||| ||| || |||||||||||||| | || ||||| |||||| Sbjct 28653 TAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 28712 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGC 794025 | ||| ||||||| | | |||| ||| ||| || |||||| | || |||| Sbjct 28713 AAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGA--CCAGAAGGC 28770 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 |||| || ||||| || |||||||| ||| | | || ||||||||||| || || Sbjct 28771 GGTCAGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGC 28830 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 |||||| | ||| | | ||||||| ||| |||| |||||| || | ||||| Sbjct 28831 AGGGCAGAGCCTCAGTCAGGAACTCTTGCTCAATCTTGACGGCATCAACAATGAT 28885 Score = 98.7 bits (108), Expect = 2e-14 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 794548 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 || || |||||| ||||||| ||| | || | || ||||||| |||||| ||||| Sbjct 29615 GTATCAATGGCGTTGAAGAGGTAGGTGCGCTGCG-CAGGTTCCTTGATGTAGGTATCGAT 29673 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 |||||| ||||||||||| ||||||||||| || || |||||||||||| || ||||| Sbjct 29674 GAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 29733 Query 794667 G 794667 | Sbjct 29734 G 29734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915968336897546