Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1510 131 3e-24
seq719 125 1e-22
seq1802 104 4e-16
>seq1510
Length=33207
Score = 131 bits (144), Expect = 3e-24
Identities = 92/105 (88%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||| ||||||||||| |||||||| | || || |||||||| || ||| | |
Sbjct 20311 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGTAAGACCGTCGCTAACATGA 20370
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
|||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 20371 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTCAACATCA 20415
>seq719
Length=48969
Score = 125 bits (138), Expect = 1e-22
Identities = 330/504 (65%), Gaps = 21/504 (4%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| ||||| || |||| ||| ||||| || |||||||| | | ||||| ||
Sbjct 17138 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGA 17197
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||||| || | ||||| ||| | || || | ||| ||| | ||
Sbjct 17198 TGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGACC 17257
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||||| || ||| ||||||||| | ||||| | || || || ||||| || |||||
Sbjct 17258 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 17317
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGT 2073776
|| ||||| |||||||||| | || ||||| || || || ||| | | ||
Sbjct 17318 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGA---CAGCTGGCACTGAGGGGT 17374
Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836
|| || |||||||| ||||| | || ||| | ||| ||||||| | |||
Sbjct 17375 ACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTA 17434
Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896
||| ||| || ||| | ||||| || || || ||||| ||
Sbjct 17435 GGTCTCGATGACACGC------------TCGACGTTATCA---CCCCAGATGCCGACTGC 17479
Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTA 2073956
|| ||||||||||||| ||| |||| |||| | | | || | ||| ||||||
Sbjct 17480 AACACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAGGTA 17539
Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016
|| | || |||| | ||| ||||| |||| | |||||| |||| | ||
Sbjct 17540 TGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAAT 17599
Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040
||| | |||||| | ||||||||
Sbjct 17600 GGCAGAGTCGAGCTCTTCCTTGTG 17623
>seq1802
Length=45256
Score = 104 bits (114), Expect = 4e-16
Identities = 165/235 (70%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
|| ||| | || ||| ||| || |||||||||||||| | || ||||| ||||||
Sbjct 28653 TAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 28712
Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGC 794025
| ||| ||||||| | | |||| ||| ||| || |||||| | || ||||
Sbjct 28713 AAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGA--CCAGAAGGC 28770
Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085
|||| || ||||| || |||||||| ||| | | || ||||||||||| || ||
Sbjct 28771 GGTCAGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGC 28830
Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140
|||||| | ||| | | ||||||| ||| |||| |||||| || | |||||
Sbjct 28831 AGGGCAGAGCCTCAGTCAGGAACTCTTGCTCAATCTTGACGGCATCAACAATGAT 28885
Score = 98.7 bits (108), Expect = 2e-14
Identities = 96/121 (79%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 794548 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
|| || |||||| ||||||| ||| | || | || ||||||| |||||| |||||
Sbjct 29615 GTATCAATGGCGTTGAAGAGGTAGGTGCGCTGCG-CAGGTTCCTTGATGTAGGTATCGAT 29673
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|||||| ||||||||||| ||||||||||| || || |||||||||||| || |||||
Sbjct 29674 GAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 29733
Query 794667 G 794667
|
Sbjct 29734 G 29734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915968336897546
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |