Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 141 2e-28
>seq1474
Length=13610
Score = 141 bits (156), Expect = 2e-28
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | ||||| || || || ||||| || ||||| || || | | |||
Sbjct 6224 ACGGAGGACGAGATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGTACGACC 6283
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|||||| | || |||||||| ||||| || | || || || ||||| || || |||||
Sbjct 6284 GTCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTT 6343
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||| |||||||| | || || || |||||||| ||| | || |||||||| || ||
Sbjct 6344 ATCCTGAATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAAT 6403
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||||| ||||||||||| || || ||||||||
Sbjct 6404 CGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 6439
Score = 116 bits (128), Expect = 7e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || ||||| || ||||| || ||||| || || || || |
Sbjct 6667 TACCACCGCGAAGACGAAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGG 6726
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | ||||| || ||||| || ||||||||||| | | || || || || |
Sbjct 6727 AGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGG 6786
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || |||||||| |||||||| | || ||||| || || |||||| || || |
Sbjct 6787 GAATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGA 6846
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798
| || | ||| || |||||||| || | |||||| ||
Sbjct 6847 CCTCGAGAGTGATGGTCTTGCCAGTGAGCGTCTTGAC 6883
Score = 107 bits (118), Expect = 4e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || |||||| || | ||||| || || || ||||| || || || || |
Sbjct 6439 TACCACCACGCAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCG 6498
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | | | | ||| || || || || ||||| || ||||| | | || || || ||||
Sbjct 6499 ACAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAG 6558
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| ||||| ||||| | || || || ||||| || || || ||| |
Sbjct 6559 GAATACCCTCCTTGTCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAA 6618
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | || ||||||||||| || | || || || || ||||||||
Sbjct 6619 CCTCGAGCGTAATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981794316766146
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |