Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq719 257 2e-63 seq1284 143 3e-29 seq1474 116 4e-21 seq1802 89.7 5e-13 >seq719 Length=48969 Score = 257 bits (284), Expect = 2e-63 Identities = 1007/1554 (65%), Gaps = 67/1554 (4%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| ||||||||||| || || || ||| | || | |||| || | || Sbjct 16086 TTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGC 16145 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || || |||||||||||||||| ||||||| || | || || |||||| || || Sbjct 16146 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACG 16205 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 |||| |||||||| |||| | | || || | |||||||| |||||||||| Sbjct 16206 AGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAATCCCAGTCCCAA 16265 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || || || | || ||||||||||||||||| || || || || ||| | Sbjct 16266 AGATCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAG 16325 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTT---CGCAGCTCGCCTCGAGC 148556 |||||||||| | ||| | || | | || ||||| | || | | | | || Sbjct 16326 CCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACGGACATGGTC---AGA 16382 Query 148557 GCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CA-GCGCCGC-CGACTCGCT 148612 || ||| ||| || ||||| || | | ||||||| || | ||| | || | Sbjct 16383 GCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACGGGCCTCAGGAGAC--- 16439 Query 148613 TTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAAT 148672 ||| | ||||| || || | || || || ||||| ||||| || || | ||||| Sbjct 16440 -TCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCAAT 16498 Query 148673 GGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGA 148731 ||| ||||| |||||| ||| || ||| || | || ||||||||| || | Sbjct 16499 GGGGCGGTGACGCATGTTGCTATTGCGAGC-CTCGGGAACGGGGTAGTGGTTGACATCAA 16557 Query 148732 TGATCTTG-TCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC------AATTCA 148784 |||||||| ||||| ||||| || || |||| || | | | ||| || ||| Sbjct 16558 TGATCTTGTTCAAG-TTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCA 16616 Query 148785 ---AAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCAC 148841 | | | | |||| || |||| | | || || ||| | || || | ||||| Sbjct 16617 TAGACACCATCGTTGTAGTCAACGAAG-GTGGG--CAGGGCAAGGGAAGCCAAGTTGCAG 16673 Query 148842 ACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTG 148901 || || |||||| || |||| |||||| | |||||| | ||| || ||| || | Sbjct 16674 ACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGG 16733 Query 148902 ATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTAC 148961 || |||| |||||| || |||||||||| |||| || |||||||| |||||| | Sbjct 16734 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAG 16793 Query 148962 GGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACCGATGCAGGTCCTGCGCGCGC 149018 || |||||| || ||| | || | ||| ||| | || | ||| || Sbjct 16794 GGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAA---AGCTTCTGGGC---- 16846 Query 149019 ACTTGCTGCTCGTAGCGACCCT---CCT---GCTCGTA--TAAAGTATACAGCCGCTCGA 149070 |||| | || | |||||||| ||| | ||||| | ||| | || ||||| Sbjct 16847 -CTTGATAGTC-TTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGC--CTCGA 16902 Query 149071 ACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACA 149130 || | ||||||||||| || | | || ||||||| | ||||||||||| | ||| Sbjct 16903 ACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGT 16962 Query 149131 CGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGT 149190 || ||| | | || | |||||| ||||||||||| | |||||| ||| | || | Sbjct 16963 CGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGAT 17022 Query 149191 CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA-GCACGCTGAATATG 149249 |||| || | || || ||| ||| ||||| || | | || | ||| | Sbjct 17023 CGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTC-GAAGACA 17081 Query 149250 TCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGG 149306 || |||||||| ||||||| ||| | |||| || || ||| ||||| |||||| Sbjct 17082 TCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGG 17141 Query 149307 TCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCAC---TGGCA 149363 ||||||| ||| | ||||||| || || |||| ||| || |||| ||| | | Sbjct 17142 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGG---AATGACACCGTTCGAT 17198 Query 149364 GTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCG 149423 || ||||| || | |||| ||| || || | ||| |||||| || Sbjct 17199 GTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGACCA 17258 Query 149424 ATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTC 149482 ||||| || ||| | ||| ||||| |||||| ||| || ||| || ||||| Sbjct 17259 ATGCCACCAGCCAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 17317 Query 149483 GATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCC 149542 || ||| ||||||| | || ||||| || ||| || | | || || Sbjct 17318 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 17377 Query 149543 GGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACG 149601 || ||| | |||||| |||||| || || | || |||| ||| | | ||| | Sbjct 17378 AGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGG-ACATGAGGTTGTAGG 17436 Query 149602 ACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATAT 149661 ||||| || || || | || ||| || |||||| | || || ||||| | ||| | Sbjct 17437 TCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCATGATCATGT 17496 Query 149662 GCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCT 149721 |||| |||| ||| || | ||| ||| || |||| ||| | || | |||| Sbjct 17497 GCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAGGTATGATCTCTCCAAGGTCT 17556 Query 149722 TGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 || |||| ||||| | ||||| ||||||||| ||| | ||||||| | ||||| Sbjct 17557 TGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGAGTCGA 17610 >seq1284 Length=15898 Score = 143 bits (158), Expect = 3e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| ||||||||||||||| || Sbjct 6247 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 6188 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 6187 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 6128 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || ||||| ||||| || Sbjct 6127 GACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGT 6068 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 6067 CTTGACGAAGATCTGCATG 6049 >seq1474 Length=13610 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || ||||||||| | ||| |||||| ||| Sbjct 6976 AAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCAAGC 7035 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| ||||||| |||||||||||||| || || || |||||||| ||| Sbjct 7036 TGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGAATC 7095 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | || |||| || ||| || |||| ||||| ||| |||||| Sbjct 7096 TTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCG 7155 Query 133635 GT 133636 || Sbjct 7156 GT 7157 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| || || ||| ||| | ||||| |||| Sbjct 6464 ATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGTGCGACCA-TCCTCAAGCT 6522 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || | ||||||||||||||||| || || |||||||| ||||| Sbjct 6523 GCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCTTGGATCT 6582 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| ||||| | | || || |||| || | || ||||| | Sbjct 6583 TCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCAG 6642 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | |||||||| |||||||||||||| Sbjct 6643 TAAGAGTTTTGACGAAAATCTGCAT 6667 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | ||| ||||| ||||| || || || |||| || || |||| ||| || | | Sbjct 6236 ATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGT--ACGACCGTCTTCCAAC 6293 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || || ||||||||||||||||| || || ||||| || ||| Sbjct 6294 TGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGAATC 6353 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| |||||| | | ||| || || | || | || ||||| Sbjct 6354 TTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTGCCA 6413 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 6414 GTCAACGTCTTGACGAAGATCTGCAT 6439 >seq1802 Length=45256 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| |||||||||||||| || || || || ||||||||| || ||| Sbjct 29130 AGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTC 29189 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAA 120746 || |||||||||| || | |||||| |||| |||| |||||| Sbjct 29190 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCAAA 29236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483405004225360