Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq719 257 2e-63
seq1284 143 3e-29
seq1474 116 4e-21
seq1802 89.7 5e-13
>seq719
Length=48969
Score = 257 bits (284), Expect = 2e-63
Identities = 1007/1554 (65%), Gaps = 67/1554 (4%)
Strand=Plus/Plus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || ||||| ||||||||||| || || || ||| | || | |||| || | ||
Sbjct 16086 TTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGC 16145
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
|| || |||||||||||||||| ||||||| || | || || |||||| || ||
Sbjct 16146 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACG 16205
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439
|||| |||||||| |||| | | || || | |||||||| ||||||||||
Sbjct 16206 AGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAATCCCAGTCCCAA 16265
Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499
|| || || | || ||||||||||||||||| || || || || ||| |
Sbjct 16266 AGATCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAG 16325
Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTT---CGCAGCTCGCCTCGAGC 148556
|||||||||| | ||| | || | | || ||||| | || | | | | ||
Sbjct 16326 CCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACGGACATGGTC---AGA 16382
Query 148557 GCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CA-GCGCCGC-CGACTCGCT 148612
|| ||| ||| || ||||| || | | ||||||| || | ||| | || |
Sbjct 16383 GCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACGGGCCTCAGGAGAC--- 16439
Query 148613 TTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAAT 148672
||| | ||||| || || | || || || ||||| ||||| || || | |||||
Sbjct 16440 -TCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCAAT 16498
Query 148673 GGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGA 148731
||| ||||| |||||| ||| || ||| || | || ||||||||| || |
Sbjct 16499 GGGGCGGTGACGCATGTTGCTATTGCGAGC-CTCGGGAACGGGGTAGTGGTTGACATCAA 16557
Query 148732 TGATCTTG-TCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC------AATTCA 148784
|||||||| ||||| ||||| || || |||| || | | | ||| || |||
Sbjct 16558 TGATCTTGTTCAAG-TTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCA 16616
Query 148785 ---AAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCAC 148841
| | | | |||| || |||| | | || || ||| | || || | |||||
Sbjct 16617 TAGACACCATCGTTGTAGTCAACGAAG-GTGGG--CAGGGCAAGGGAAGCCAAGTTGCAG 16673
Query 148842 ACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTG 148901
|| || |||||| || |||| |||||| | |||||| | ||| || ||| || |
Sbjct 16674 ACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGG 16733
Query 148902 ATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTAC 148961
|| |||| |||||| || |||||||||| |||| || |||||||| |||||| |
Sbjct 16734 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAG 16793
Query 148962 GGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACCGATGCAGGTCCTGCGCGCGC 149018
|| |||||| || ||| | || | ||| ||| | || | ||| ||
Sbjct 16794 GGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAA---AGCTTCTGGGC---- 16846
Query 149019 ACTTGCTGCTCGTAGCGACCCT---CCT---GCTCGTA--TAAAGTATACAGCCGCTCGA 149070
|||| | || | |||||||| ||| | ||||| | ||| | || |||||
Sbjct 16847 -CTTGATAGTC-TTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGC--CTCGA 16902
Query 149071 ACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACA 149130
|| | ||||||||||| || | | || ||||||| | ||||||||||| | |||
Sbjct 16903 ACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGT 16962
Query 149131 CGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGT 149190
|| ||| | | || | |||||| ||||||||||| | |||||| ||| | || |
Sbjct 16963 CGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGAT 17022
Query 149191 CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA-GCACGCTGAATATG 149249
|||| || | || || ||| ||| ||||| || | | || | ||| |
Sbjct 17023 CGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTC-GAAGACA 17081
Query 149250 TCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGG 149306
|| |||||||| ||||||| ||| | |||| || || ||| ||||| ||||||
Sbjct 17082 TCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGG 17141
Query 149307 TCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCAC---TGGCA 149363
||||||| ||| | ||||||| || || |||| ||| || |||| ||| | |
Sbjct 17142 TCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGG---AATGACACCGTTCGAT 17198
Query 149364 GTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCG 149423
|| ||||| || | |||| ||| || || | ||| |||||| ||
Sbjct 17199 GTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGAGCGTTGAGACCA 17258
Query 149424 ATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTC 149482
||||| || ||| | ||| ||||| |||||| ||| || ||| || |||||
Sbjct 17259 ATGCCACCAGCCAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCCTC 17317
Query 149483 GATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCC 149542
|| ||| ||||||| | || ||||| || ||| || | | || ||
Sbjct 17318 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 17377
Query 149543 GGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACG 149601
|| ||| | |||||| |||||| || || | || |||| ||| | | ||| |
Sbjct 17378 AGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGG-ACATGAGGTTGTAGG 17436
Query 149602 ACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATAT 149661
||||| || || || | || ||| || |||||| | || || ||||| | ||| |
Sbjct 17437 TCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCATGATCATGT 17496
Query 149662 GCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCT 149721
|||| |||| ||| || | ||| ||| || |||| ||| | || | ||||
Sbjct 17497 GCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTAAGCAGGTATGATCTCTCCAAGGTCT 17556
Query 149722 TGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775
|| |||| ||||| | ||||| ||||||||| ||| | ||||||| | |||||
Sbjct 17557 TGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGAGTCGA 17610
>seq1284
Length=15898
Score = 143 bits (158), Expect = 3e-29
Identities = 151/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| || ||| ||||||||||||||| ||
Sbjct 6247 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 6188
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || |||||||||||||| |||||||| |||||||| |||||| |||
Sbjct 6187 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 6128
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | |||||| || | ||||| || ||||| ||||| ||
Sbjct 6127 GACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGT 6068
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 6067 CTTGACGAAGATCTGCATG 6049
>seq1474
Length=13610
Score = 116 bits (128), Expect = 4e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||| ||||| ||||| || ||||||||| | ||| |||||| |||
Sbjct 6976 AAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCAAGC 7035
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| ||| ||||||| |||||||||||||| || || || |||||||| |||
Sbjct 7036 TGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGAATC 7095
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | || | || |||| || ||| || |||| ||||| ||| ||||||
Sbjct 7096 TTGGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCG 7155
Query 133635 GT 133636
||
Sbjct 7156 GT 7157
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| ||||| ||||| || ||||| || || ||| ||| | ||||| ||||
Sbjct 6464 ATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGACAAAGTGCGACCA-TCCTCAAGCT 6522
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || ||| | || | ||||||||||||||||| || || |||||||| |||||
Sbjct 6523 GCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTGTCTTGGATCT 6582
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||| | | |||| ||||| | | || || |||| || | || ||||| |
Sbjct 6583 TCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCAG 6642
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
| |||||||| ||||||||||||||
Sbjct 6643 TAAGAGTTTTGACGAAAATCTGCAT 6667
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514
||| | ||| ||||| ||||| || || || |||| || || |||| ||| || | |
Sbjct 6236 ATGCAGGGTTGACTCCTTCTGGATGTTATAGTCGCTCAGGGT--ACGACCGTCTTCCAAC 6293
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| | || || ||||||||||||||||| || || ||||| || |||
Sbjct 6294 TGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGAATC 6353
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | |||| |||||| | | ||| || || | || | || |||||
Sbjct 6354 TTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTGCCA 6413
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
|||| || || ||||| ||||||||
Sbjct 6414 GTCAACGTCTTGACGAAGATCTGCAT 6439
>seq1802
Length=45256
Score = 89.7 bits (98), Expect = 5e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699
||||| |||||||| |||||||||||||| || || || || ||||||||| || |||
Sbjct 29130 AGGCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTC 29189
Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAA 120746
|| |||||||||| || | |||||| |||| |||| ||||||
Sbjct 29190 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCAAA 29236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483405004225360
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