Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1474 96.9 8e-15 >seq1474 Length=13610 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | || || || ||||| || |||||||| || |||||| Sbjct 6436 CAGATCTTCGTCAAGACGTTGACTGGCAAGACGATTACGTTGGAAGTCGAGTCATCTGAC 6377 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || ||| || ||| || Sbjct 6376 ACGATTGATAACGTGAAGTCCAAGATTCAGGATAAGGAGGGTATTCCTCCCGACCAGCAG 6317 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| ||||||||||||||||| || | || || ||| || ||| || Sbjct 6316 CGTCTTATCTTCGCTGGAAAGCAGTTGGAAGACGGTCGTACCCTGAGCGACTATAACATC 6257 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 6256 CAGAAGGAGTCAACCCTGCATCTCGT 6231 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || || || || ||||| || | || || ||| ||| ||| Sbjct 6664 CAGATTTTCGTCAAAACTCTTACTGGCAAGACGATTACGCTCGAGGTTGAATCTTCAGAC 6605 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || || ||| || ||| || Sbjct 6604 ACCATTGACAACGTTAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCCGACCAGCAG 6545 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||||||||||||| | || ||||| | |||||| | || |||||| | Sbjct 6544 CGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCGGACTACAACATT 6485 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 6484 CAGAAGGAGTCAACCCTGCATCTCGT 6459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181781218605494