Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq719 174 1e-38 seq1284 84.2 2e-11 >seq719 Length=48969 Score = 174 bits (192), Expect = 1e-38 Identities = 734/1141 (64%), Gaps = 35/1141 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||| || || ||||| | | || | ||| ||| | ||| Sbjct 16086 TTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATGTTGGAGGTGTAGGGC 16145 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| || || || | |||| || ||||||||| || || Sbjct 16146 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGGGCAACG 16205 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || |||| ||||| | | ||| | ||||||| || | ||||||||| Sbjct 16206 AGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAATCCCAGTCCCAA 16265 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | |||||| | || ||||||||||||||||| || | || | | || | Sbjct 16266 AGATCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAG 16325 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAG--CTTGCCTCGAGCG 147190 || || |||| | |||| | || || || |||| | | | | || || || | Sbjct 16326 CCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACGGACATG-GTC-AGAG 16383 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCTC 147248 | | | ||| ||||| || ||| | ||||| || |||| || || ||| Sbjct 16384 CAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACGG--GCCTCAGGAGACTC 16441 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | ||||||| || || | || ||||| || | |||||||| ||| | || || || Sbjct 16442 GAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCAATGGG 16501 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCG-CTC-GCTATGGGATAGTGGTTGCGATCAATA 147366 || || |||||| | || | ||| | | ||| ||||||||| |||||| Sbjct 16502 GCGGTGACGCATGTTGCT--ATTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATG 16559 Query 147367 ATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA- 147425 |||||||| | ||| || || || || | ||| | | || |||| ||| ||||| Sbjct 16560 ATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCATAG 16619 Query 147426 AGTCC--CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACG 147483 | || ||| | | || ||| | | || ||| | || |||| |||||||| Sbjct 16620 ACACCATCGTTGTAGTCA---ACGAAGGTGGGCAGGGCAAGGGAAGCCAAGTTGCAGACA 16676 Query 147484 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543 || ||| |||| ||| ||||| | ||| || | ||| |||||| || ||| Sbjct 16677 GCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATG 16736 Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 ||||| || | ||| ||||| || || ||| || || ||| |||||||| | || Sbjct 16737 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGG 16796 Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660 ||| |||||| || | |||| ||| | ||| | || | ||| || | Sbjct 16797 TTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAA---AGCTTCTGGGCCTTGATA 16853 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 || ||| ||||||| ||||||| ||||||||| ||| ||||| |||||| Sbjct 16854 GTCTTGCGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCTCGAACTCTTCGCCG 16913 Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCG 147780 ||||| || || | ||| || |||| || || ||||| || | ||| | ||| | Sbjct 16914 TAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTC 16973 Query 147781 TTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTG 147840 | || | ||| |||||||| || | ||| || ||| | ||||||||| || | Sbjct 16974 TCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCGCGAGCACGG 17033 Query 147841 CAATCCTC---GGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTG 147896 ||||| | || | ||||| ||| | | | || | | ||| |||||||| Sbjct 17034 ACCTCCTCCTTGCCGTGGTTCTTGCG---CAAGTCCATGAACTCGA-AGACATCGGCGTG 17089 Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953 |||||| |||| ||| | ||| | ||||| |||| || || ||||||||||| | Sbjct 17090 CCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTA 17149 Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013 ||| | ||||||| || || || | |||||| | ||| ||| || |||||||| Sbjct 17150 GCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTCGATGTACCGTTGGT 17209 Query 148014 G 148014 | Sbjct 17210 G 17210 >seq1284 Length=15898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||||| || || |||||||||||| || ||| Sbjct 6271 ACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 6212 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || |||||||| || |||| |||| || ||||| || || || || ||||| Sbjct 6211 GCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 6152 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| || |||||| || | Sbjct 6151 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAG 6092 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 || | || || || ||||| || || | ||| |||||||||| Sbjct 6091 GGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGA 6048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476595626729040