Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1593 152 6e-32 >seq1593 Length=35623 Score = 152 bits (168), Expect = 6e-32 Identities = 338/513 (66%), Gaps = 47/513 (9%) Strand=Plus/Plus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 |||||||||| ||||||||||||||| |||| | |||| | | ||||| Sbjct 956 TCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCTTCCCGGTACC 1015 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || | | | || | ||||| || || |||| ||||||||| ||||||||||| Sbjct 1016 AGATCGCACGCCCGCGCAATCATGTGTGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGT 1075 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT--CCC------ 147097 || || || |||||||| | |||| ||||||||||||||| ||| | ||| Sbjct 1076 ACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAGCTGGCAATGGAGGTGGCCCTTTGGC 1135 Query 147098 -----------------CGTCG-GCC-------------------ACGTAAAACTG-GCA 147119 ||| | ||| ||||||||||| ||| Sbjct 1136 TTCTCCTCATTTGCGAGCGTTGCGCCGCGGGCTCGCGGGTACGAGACGTAAAACTGCGCA 1195 Query 147120 CAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGAC 147179 | |||||||||||||| |||||||| ||||||||| || ||||| || || Sbjct 1196 AAC-ATGTGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCTGGATTCCACGCGCTGAG 1254 Query 147180 CACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTC 147239 | | || | | | |||||| |||| | || | ||| ||| ||| ||||| Sbjct 1255 GAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTC 1314 Query 147240 CACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCA 147299 |||||||||||| ||| | ||| | |||| |||||| ||| |||||||| | ||| Sbjct 1315 GACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTACTCGGCGCCAAAGTGGCGCCA 1374 Query 147300 CTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTT 147359 |||||||||||||| || || ||||||||| | | ||| |||| ||| | | | Sbjct 1375 TTGGAAGCCGTACACGGGGCCGAGGTCGCCGACTTCGCGGTGTGAGAGGCCGACGCTGTC 1434 Query 147360 GAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 ||| |||||| | || |||| | |||||||||| Sbjct 1435 GAGGAACTCGCGCGATCCGTTGCCGTCCCAGAT 1467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583468934529600