Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq719 143 4e-28
seq1802 136 6e-26
seq657 86.0 9e-11
>seq719
Length=48969
Score = 143 bits (158), Expect = 4e-28
Identities = 342/509 (67%), Gaps = 31/509 (6%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||| | |||||| ||||||| | ||| ||| ||||| |||| |||||
Sbjct 17623 CACAAGGAAGAGCTCGACTCTGCCATTGTCTACGACCGCGACTTCAACTACCAATACTTC 17564
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAG--TGC--GCGATATTGTCGTCGA 259797
|| | ||||||| | || |||||| | ||| || || | |||| || |
Sbjct 17563 GGCTTCAAGACCTTGGAGAGATCATACCTG-CTTAAGCTTGACGGCAAGATTGCCG---A 17508
Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857
| | || ||| | ||| |||||||||| || | ||| | |||| | ||
Sbjct 17507 GAGACCTCAGCACATGATCATGCGTGTTGCAGTCGGCA--TCTGGGGT----------GA 17460
Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCT 259916
|| | | |||| || ||| |||||| | |||||| ||||| ||| ||||||
Sbjct 17459 TAACG---TCGAGCGTGTCATCGAGACCTACAACCTCATGTC-CAGCAAGTTCTTCACCC 17404
Query 259917 CAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCT 259973
|| | ||||| ||||| || || || || || | ||| || | || || ||||
Sbjct 17403 ACGCCTCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTG---TCTTCATGCT 17347
Query 259974 TTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCG 260033
| || | |||||||||| || || || ||||| || || ||||| |||||| ||||
Sbjct 17346 TCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCG 17287
Query 260034 CGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGG 260093
| | ||||||||| ||| || ||||| ||| | ||| ||| | || || | |
Sbjct 17286 CCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCTACTG 17227
Query 260094 GCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTT 260153
|| ||||| | || ||||||||||| || ||||| | | ||||||||||| || |
Sbjct 17226 GCTCCTACATTGCCGGCACCAACGGTACATCGAACGGTGTCATTCCCATGCTTCGTGTCT 17167
Query 260154 TTAACGACACGGCGCGCTACGTCGACCAG 260182
| ||| |||| || |||||||||||||||
Sbjct 17166 TCAACAACACTGCTCGCTACGTCGACCAG 17138
>seq1802
Length=45256
Score = 136 bits (150), Expect = 6e-26
Identities = 238/340 (70%), Gaps = 15/340 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||||||||| ||||| ||||||||||||||| | || |
Sbjct 29947 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATC 29889
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887
|| | || |||| ||||| | | | ||| || ||| | |||
Sbjct 29888 TCTCCAAGGATCTCCACG----ACTGGAACAACAAGATCAACGATGATGAGAAGTACTTC 29833
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||| | || ||||| || |||||| ||||| ||||| ||||||||| |
Sbjct 29832 ATCTCTCACATTCTTGCCTTCTT-CGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGT 29774
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
| ||||| |||||||| | || ||||| || | || ||||| ||||||||
Sbjct 29773 TGAGCGCTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGAT 29714
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || || |||||||||||||| |||||||| ||||| ||||| |||||| |||||||
Sbjct 29713 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGA 29654
Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACAC 1456106
|| | || | ||| ||||||| |||||| || ||
Sbjct 29653 ACCTG-CGCAGCGCACCTACCTCTTCAACGCCATTGATAC 29615
Score = 91.5 bits (100), Expect = 2e-12
Identities = 174/251 (69%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
||||| || || |||||| |||| ||| ||||||| | | ||| | ||||| ||
Sbjct 28885 ATCATTGTTGATGCCGTCAAGATTGAGCAAGAGTTCCTGACTGAGGCTCTGCCCTGCGCT 28826
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| ||||||||||| ||| | | ||| |||||||| | | || || || |||||||
Sbjct 28825 CTTCTCGGCATGAACTCCAAC-TTGATGAAGCAGTACATCG-AGTTCGTTGCTGACCGCC 28768
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| || | || || ||| | || ||| |||| | | ||||||| ||| | |||
Sbjct 28767 TTCTGGTCGCTCTTGGCAAC-GACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATG 28709
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| ||||| || | |||||||||||||| || ||| || || | ||| |||
Sbjct 28708 GAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGATTACCAA 28649
Query 1456762 AAGGCCGGCGT 1456772
|||||||| ||
Sbjct 28648 AAGGCCGGTGT 28638
>seq657
Length=61752
Score = 86.0 bits (94), Expect = 9e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584
||||||| |||||||||||| | || | |||||| |||||| |||| ||| | ||
Sbjct 3604 CATCGACACCGGCGCCGGCGTCATCGACGCCGACTACCGCGGCCAGGTCAAGGTCCTCCT 3663
Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644
|||||||| ||||| | |||| || |||| | |||| |||||||||||| | |
Sbjct 3664 CTTCAACCACGCCGACACTGACTTTGAGGTCGCCGAGGGCGACCGCATCGCCCAGCTCAT 3723
Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704
| | || || | ||||||| ||| ||||| | || || || | || |||
Sbjct 3724 CATCGAGCGCATCTTCACTCCCGAGGTCGTCGAGGTCGTCGAGCTCGAGGAGAGCGTGCG 3783
Query 334705 CGGCACCGGCGGCTTTGG 334722
|||| | ||||| || ||
Sbjct 3784 CGGCGCTGGCGGATTCGG 3801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177559074895468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |