Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq719 143 4e-28 seq1802 136 6e-26 seq657 86.0 9e-11 >seq719 Length=48969 Score = 143 bits (158), Expect = 4e-28 Identities = 342/509 (67%), Gaps = 31/509 (6%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | |||||| ||||||| | ||| ||| ||||| |||| ||||| Sbjct 17623 CACAAGGAAGAGCTCGACTCTGCCATTGTCTACGACCGCGACTTCAACTACCAATACTTC 17564 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAG--TGC--GCGATATTGTCGTCGA 259797 || | ||||||| | || |||||| | ||| || || | |||| || | Sbjct 17563 GGCTTCAAGACCTTGGAGAGATCATACCTG-CTTAAGCTTGACGGCAAGATTGCCG---A 17508 Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857 | | || ||| | ||| |||||||||| || | ||| | |||| | || Sbjct 17507 GAGACCTCAGCACATGATCATGCGTGTTGCAGTCGGCA--TCTGGGGT----------GA 17460 Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCT 259916 || | | |||| || ||| |||||| | |||||| ||||| ||| |||||| Sbjct 17459 TAACG---TCGAGCGTGTCATCGAGACCTACAACCTCATGTC-CAGCAAGTTCTTCACCC 17404 Query 259917 CAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCT 259973 || | ||||| ||||| || || || || || | ||| || | || || |||| Sbjct 17403 ACGCCTCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTG---TCTTCATGCT 17347 Query 259974 TTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCG 260033 | || | |||||||||| || || || ||||| || || ||||| |||||| |||| Sbjct 17346 TCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCG 17287 Query 260034 CGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGG 260093 | | ||||||||| ||| || ||||| ||| | ||| ||| | || || | | Sbjct 17286 CCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCTACTG 17227 Query 260094 GCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTT 260153 || ||||| | || ||||||||||| || ||||| | | ||||||||||| || | Sbjct 17226 GCTCCTACATTGCCGGCACCAACGGTACATCGAACGGTGTCATTCCCATGCTTCGTGTCT 17167 Query 260154 TTAACGACACGGCGCGCTACGTCGACCAG 260182 | ||| |||| || ||||||||||||||| Sbjct 17166 TCAACAACACTGCTCGCTACGTCGACCAG 17138 >seq1802 Length=45256 Score = 136 bits (150), Expect = 6e-26 Identities = 238/340 (70%), Gaps = 15/340 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| ||||||||||||||| | || | Sbjct 29947 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATC 29889 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| | | | ||| || ||| | ||| Sbjct 29888 TCTCCAAGGATCTCCACG----ACTGGAACAACAAGATCAACGATGATGAGAAGTACTTC 29833 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| | || ||||| || |||||| ||||| ||||| ||||||||| | Sbjct 29832 ATCTCTCACATTCTTGCCTTCTT-CGCCGCGTCGGATGGTATCGTCAACGAGAACCTCGT 29774 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| |||||||| | || ||||| || | || ||||| |||||||| Sbjct 29773 TGAGCGCTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGAT 29714 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || |||||||||||||| |||||||| ||||| ||||| |||||| ||||||| Sbjct 29713 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGATACCTACATCAAGGA 29654 Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACAC 1456106 || | || | ||| ||||||| |||||| || || Sbjct 29653 ACCTG-CGCAGCGCACCTACCTCTTCAACGCCATTGATAC 29615 Score = 91.5 bits (100), Expect = 2e-12 Identities = 174/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| || || |||||| |||| ||| ||||||| | | ||| | ||||| || Sbjct 28885 ATCATTGTTGATGCCGTCAAGATTGAGCAAGAGTTCCTGACTGAGGCTCTGCCCTGCGCT 28826 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| ||| | | ||| |||||||| | | || || || ||||||| Sbjct 28825 CTTCTCGGCATGAACTCCAAC-TTGATGAAGCAGTACATCG-AGTTCGTTGCTGACCGCC 28768 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || || ||| | || ||| |||| | | ||||||| ||| | ||| Sbjct 28767 TTCTGGTCGCTCTTGGCAAC-GACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATG 28709 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||||| || ||| || || | ||| ||| Sbjct 28708 GAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGATTACCAA 28649 Query 1456762 AAGGCCGGCGT 1456772 |||||||| || Sbjct 28648 AAGGCCGGTGT 28638 >seq657 Length=61752 Score = 86.0 bits (94), Expect = 9e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584 ||||||| |||||||||||| | || | |||||| |||||| |||| ||| | || Sbjct 3604 CATCGACACCGGCGCCGGCGTCATCGACGCCGACTACCGCGGCCAGGTCAAGGTCCTCCT 3663 Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644 |||||||| ||||| | |||| || |||| | |||| |||||||||||| | | Sbjct 3664 CTTCAACCACGCCGACACTGACTTTGAGGTCGCCGAGGGCGACCGCATCGCCCAGCTCAT 3723 Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704 | | || || | ||||||| ||| ||||| | || || || | || ||| Sbjct 3724 CATCGAGCGCATCTTCACTCCCGAGGTCGTCGAGGTCGTCGAGCTCGAGGAGAGCGTGCG 3783 Query 334705 CGGCACCGGCGGCTTTGG 334722 |||| | ||||| || || Sbjct 3784 CGGCGCTGGCGGATTCGG 3801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177559074895468