Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 127 2e-24
seq1284 123 3e-23
>seq1474
Length=13610
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554
|| |||| ||||| || || || || ||||| ||||||||||||| || ||| ||| |
Sbjct 6450 AGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGAATGTTGTAGTCCGACAA-AGTGCG 6508
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
| || || ||||| || || || || ||||| |||||||| ||||| || || || ||
Sbjct 6509 ACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTC 6568
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
|| ||||| || || || || ||| | ||||| || ||||| || ||||| ||
Sbjct 6569 CTTGTCTTGGATCTTCGACTTAACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGT 6628
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||| || || || || | |||||| |||||||| |||||
Sbjct 6629 AATCGTCTTGCCAGTAAGAGTTTTGACGAAAATCTGCAT 6667
Score = 111 bits (122), Expect = 2e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || || || ||||| ||||||||||||||| | |||| | ||| || || ||
Sbjct 6692 GTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTG 6751
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| ||||| |||||||||||||| || || || ||||| || || || ||||| ||
Sbjct 6752 CTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGAATCTT 6811
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
||||| ||| | || || || || || || |||||||| ||||| || || ||
Sbjct 6812 CGACTTGACATTGTCGATAGTATCAGAAGACTCGACCTCGAGAGTGATGGTCTTGCCAGT 6871
Query 134690 TAAAGTTTTAACGA 134703
| || || ||||
Sbjct 6872 GAGCGTCTTGACGA 6885
>seq1284
Length=15898
Score = 123 bits (136), Expect = 3e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || ||||| || ||||| ||||| || |||||||||||| | |||| |
Sbjct 6267 AGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 6208
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| |||||||| || || || || |||| |||||||| ||||| || ||||| ||
Sbjct 6207 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 6148
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | ||||||||||| ||||| || || ||
Sbjct 6147 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 6088
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || | || || ||||| || |||||
Sbjct 6087 ATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 6050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505381886107280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |