Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq614 105 5e-18
>seq614
Length=41366
Score = 105 bits (116), Expect = 5e-18
Identities = 275/418 (66%), Gaps = 11/418 (3%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| || | || |||||||| | | || |||| ||| |||||||| ||||| ||
Sbjct 24738 CCCAAGATCATCAACGGTCCTGAGGTGCTCAACAAATTTGTCGGTCAATCTGAAGAGAAC 24679
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547
| ||| ||||||| || ||||| |||| | | || | |||||| | | |||
Sbjct 24678 ATTCGAAAGATGTTTGCGGATGCTGA-GAAGGAGTACAAGGAGAAGGGCGACCAGAGTGG 24620
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------ 19601
| | |||||||| || | ||||| |||| || |||| ||||||||||| ||
Sbjct 24619 TCTTCACATTATCATCTTCGATGAGCTGGATGCCGTCTGCAAGCAAAGAGGCTCCGGTGC 24560
Query 19602 ---TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658
||| | | ||| || ||||| ||||||||| || || || | || | |||||
Sbjct 24559 CGGTGGCGGCACTGGTGTCGGTGACAGTGTTGTCAACCAGCTTCTCACCAAGCTCGACGG 24500
Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718
|||| |||| || || || || | | || || ||||| || | ||| | || ||
Sbjct 24499 TGTTGACCAGCTCAACAACATCCTGCTCATCGGTATGACCAACCGTAAGGACATGATCGA 24440
Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778
|| | | || |||||||| ||||| | || | || |||| ||| ||| | ||
Sbjct 24439 TGAGGCGCTTCTGCGTCCCGGTCGTTTGGAGGTTCAGTTGGAGATTAGCTTGCCCAACGA 24380
Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTT 19836
| ||||| |||||| || | || || || | | |||||| | || ||| ||
Sbjct 24379 AGAGGGACGCAAGGAAATCTTCATGATCCACACTGCCAAGATGCGAGACAACAACATT 24322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397443337797070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |