Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq614 105 5e-18 >seq614 Length=41366 Score = 105 bits (116), Expect = 5e-18 Identities = 275/418 (66%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || | || |||||||| | | || |||| ||| |||||||| ||||| || Sbjct 24738 CCCAAGATCATCAACGGTCCTGAGGTGCTCAACAAATTTGTCGGTCAATCTGAAGAGAAC 24679 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | ||| ||||||| || ||||| |||| | | || | |||||| | | ||| Sbjct 24678 ATTCGAAAGATGTTTGCGGATGCTGA-GAAGGAGTACAAGGAGAAGGGCGACCAGAGTGG 24620 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------ 19601 | | |||||||| || | ||||| |||| || |||| ||||||||||| || Sbjct 24619 TCTTCACATTATCATCTTCGATGAGCTGGATGCCGTCTGCAAGCAAAGAGGCTCCGGTGC 24560 Query 19602 ---TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 ||| | | ||| || ||||| ||||||||| || || || | || | ||||| Sbjct 24559 CGGTGGCGGCACTGGTGTCGGTGACAGTGTTGTCAACCAGCTTCTCACCAAGCTCGACGG 24500 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718 |||| |||| || || || || | | || || ||||| || | ||| | || || Sbjct 24499 TGTTGACCAGCTCAACAACATCCTGCTCATCGGTATGACCAACCGTAAGGACATGATCGA 24440 Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 || | | || |||||||| ||||| | || | || |||| ||| ||| | || Sbjct 24439 TGAGGCGCTTCTGCGTCCCGGTCGTTTGGAGGTTCAGTTGGAGATTAGCTTGCCCAACGA 24380 Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTT 19836 | ||||| |||||| || | || || || | | |||||| | || ||| || Sbjct 24379 AGAGGGACGCAAGGAAATCTTCATGATCCACACTGCCAAGATGCGAGACAACAACATT 24322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443337797070