Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq719 170 2e-37 >seq719 Length=48969 Score = 170 bits (188), Expect = 2e-37 Identities = 898/1408 (64%), Gaps = 57/1408 (4%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||| | ||||| || || ||||| || || || |||||||| || | |||| Sbjct 16123 GGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGG 16182 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 |||| || ||||| || || | | | |||||| || | ||| | ||||||||| | | Sbjct 16183 AGGCAGTAGGCATGGGGGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCT 16242 Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 |||| ||| ||||||||| | | | || || || || |||| ||||||| |||| Sbjct 16243 CCTTCAGAGAATCCCAGTCCCAAAGATCAGAG-GGCTTGACATTCC-ACATGTCGTACTG 16300 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| | || ||||| || || ||||| | || |||| || | | | || Sbjct 16301 AAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGC 16360 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 || | | | | ||| | ||||| || ||||| |||||||| || | Sbjct 16361 CAGCTGAACGGACATGGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAG 16420 Query 111004 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || ||| ||| || || || |||| || | | ||| |||| || Sbjct 16421 ATCACGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAG-----CATCAGCA 16475 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC- 111117 ||||| || ||||| | |||||| || | ||| ||||| || || | ||| || ||| Sbjct 16476 AGACCCTGGACACCAAGACCAATGGGGCGGTGACGCATGTTG--CTATTGCG-AGCCTCG 16532 Query 111118 --AACGGGATAAAAATTTCTGTCAATGA-CTCGGTTTAGATTTTTGGTAACAAT---CTT 111171 |||||| || || ||||||| || | | || ||| ||||| || Sbjct 16533 GGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAG----TTGCGAACAACGACCTG 16588 Query 111172 TGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGG 111231 |||| || ||||| || | | ||| | | | | | | || | | || Sbjct 16589 AGTGACCTCGTGAAGCTTCTGGAAGTCATAGACACCATCGTTGTAGTCAACGAAGGTGGG 16648 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 ||||| | || ||||| ||||| ||||| |||||| | | |||||| | || Sbjct 16649 CAGGGCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGAT 16708 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 || || || | |||||| || || || |||| ||||| ||||| ||||| ||| Sbjct 16709 CTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTT 16768 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 | |||||||||||||||||| |||| | || ||||| ||||| | | || || || Sbjct 16769 GGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGC 16828 Query 111412 CTTCCAAA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTT 111468 | ||||| | || | | | || || | || | ||| | ||||| |||||||| Sbjct 16829 ATACCAAAGCTTCTGGGCCTTGATAGTCTTGC---GACCCTTGCCCTCGCGTTCGTACTT 16885 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 ||| | ||| || ||||| || || ||| | | || || || | || Sbjct 16886 CTCGTACAAGGCCTCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGG 16945 Query 111529 ACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 || | || | ||| | | | ||| ||| || | ||||||||| || || || |||| Sbjct 16946 GCACATGAGGGTCCAGTCGGCGTTCTT-CTCGACTCTCTTCATGAACAGATCGGGGATCC 17004 Query 111588 --ACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644 | || || |||| ||||| | | ||| || |||| || | || ||||| || | Sbjct 17005 AGAGAGCGAGGAAA--AGATCGCGAGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGCA 17061 Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704 | || | |||||| | || ||| |||||||| |||||||| || | |||| | || Sbjct 17062 AGTCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACC-- 17119 Query 111705 TTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 ||||| ||| | || | || ||||| || ||| ||| || || ||||||| Sbjct 17120 -AGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCA 17178 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 111818 | ||||| | ||| | ||| ||| || || || ||| || | | || | | Sbjct 17179 TGGGAATGACACCGTTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGA 17238 Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 111878 | || || | ||||| || |||||| ||| ||||| || || | | | Sbjct 17239 TACGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGA 17298 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 | || | || ||||| | || ||||| ||||| || ||| |||||||| |||| Sbjct 17299 GGGTGTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACA 17358 Query 111939 TCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 ||| | || || |||||||| |||||||| || || | ||||| ||| | | || Sbjct 17359 GCTG-GCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACT 17415 Query 111998 TG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055 || |||||| || ||| ||||| | |||| || | || || || |||||||| Sbjct 17416 TGCTGGACATGAGGTTGTAGGTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGA 17475 Query 112056 TTGCGACCCGCATGAACATGTACTGTGG 112083 ||| || ||||||| ||||| ||| || Sbjct 17476 CTGCAACACGCATGATCATGTGCTGAGG 17503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628011479054400