Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq719 170 2e-37
>seq719
Length=48969
Score = 170 bits (188), Expect = 2e-37
Identities = 898/1408 (64%), Gaps = 57/1408 (4%)
Strand=Plus/Plus
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765
|||||||||| | ||||| || || ||||| || || || |||||||| || | ||||
Sbjct 16123 GGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGG 16182
Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825
|||| || ||||| || || | | | |||||| || | ||| | ||||||||| | |
Sbjct 16183 AGGCAGTAGGCATGGGGGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCT 16242
Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883
|||| ||| ||||||||| | | | || || || || |||| ||||||| ||||
Sbjct 16243 CCTTCAGAGAATCCCAGTCCCAAAGATCAGAG-GGCTTGACATTCC-ACATGTCGTACTG 16300
Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943
||| | || ||||| || || ||||| | || |||| || | | | ||
Sbjct 16301 AAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGC 16360
Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
|| | | | | ||| | ||||| || ||||| |||||||| || |
Sbjct 16361 CAGCTGAACGGACATGGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAG 16420
Query 111004 CTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCG 111058
|| ||| ||| || || || |||| || | | ||| |||| ||
Sbjct 16421 ATCACGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAG-----CATCAGCA 16475
Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC- 111117
||||| || ||||| | |||||| || | ||| ||||| || || | ||| || |||
Sbjct 16476 AGACCCTGGACACCAAGACCAATGGGGCGGTGACGCATGTTG--CTATTGCG-AGCCTCG 16532
Query 111118 --AACGGGATAAAAATTTCTGTCAATGA-CTCGGTTTAGATTTTTGGTAACAAT---CTT 111171
|||||| || || ||||||| || | | || ||| ||||| ||
Sbjct 16533 GGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAG----TTGCGAACAACGACCTG 16588
Query 111172 TGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGG 111231
|||| || ||||| || | | ||| | | | | | | || | | ||
Sbjct 16589 AGTGACCTCGTGAAGCTTCTGGAAGTCATAGACACCATCGTTGTAGTCAACGAAGGTGGG 16648
Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291
||||| | || ||||| ||||| ||||| |||||| | | |||||| | ||
Sbjct 16649 CAGGGCAAGGGAAGCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGAT 16708
Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351
|| || || | |||||| || || || |||| ||||| ||||| ||||| |||
Sbjct 16709 CTCAGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTT 16768
Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411
| |||||||||||||||||| |||| | || ||||| ||||| | | || || ||
Sbjct 16769 GGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGC 16828
Query 111412 CTTCCAAA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTT 111468
| ||||| | || | | | || || | || | ||| | ||||| ||||||||
Sbjct 16829 ATACCAAAGCTTCTGGGCCTTGATAGTCTTGC---GACCCTTGCCCTCGCGTTCGTACTT 16885
Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528
||| | ||| || ||||| || || ||| | | || || || | ||
Sbjct 16886 CTCGTACAAGGCCTCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGG 16945
Query 111529 ACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587
|| | || | ||| | | | ||| ||| || | ||||||||| || || || ||||
Sbjct 16946 GCACATGAGGGTCCAGTCGGCGTTCTT-CTCGACTCTCTTCATGAACAGATCGGGGATCC 17004
Query 111588 --ACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644
| || || |||| ||||| | | ||| || |||| || | || ||||| || |
Sbjct 17005 AGAGAGCGAGGAAA--AGATCGCGAGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGCA 17061
Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704
| || | |||||| | || ||| |||||||| |||||||| || | |||| | ||
Sbjct 17062 AGTCCATGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACC-- 17119
Query 111705 TTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758
||||| ||| | || | || ||||| || ||| ||| || || |||||||
Sbjct 17120 -AGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCA 17178
Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCA 111818
| ||||| | ||| | ||| ||| || || || ||| || | | || | |
Sbjct 17179 TGGGAATGACACCGTTCGATGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGA 17238
Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 111878
| || || | ||||| || |||||| ||| ||||| || || | | |
Sbjct 17239 TACGGTGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGA 17298
Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938
| || | || ||||| | || ||||| ||||| || ||| |||||||| ||||
Sbjct 17299 GGGTGTCGTAAATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACA 17358
Query 111939 TCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997
||| | || || |||||||| |||||||| || || | ||||| ||| | | ||
Sbjct 17359 GCTG-GCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACT 17415
Query 111998 TG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055
|| |||||| || ||| ||||| | |||| || | || || || ||||||||
Sbjct 17416 TGCTGGACATGAGGTTGTAGGTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGA 17475
Query 112056 TTGCGACCCGCATGAACATGTACTGTGG 112083
||| || ||||||| ||||| ||| ||
Sbjct 17476 CTGCAACACGCATGATCATGTGCTGAGG 17503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628011479054400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |