Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq719 188 9e-43
seq1802 91.5 2e-13
>seq719
Length=48969
Score = 188 bits (208), Expect = 9e-43
Identities = 1072/1696 (63%), Gaps = 61/1696 (4%)
Strand=Plus/Plus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|| ||||||||||| ||||||||||| || |||||||| | | ||||| ||
Sbjct 15780 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATGCTGGTG 15839
Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956
| |||| | || || | |||| || ||| | ||||| || |||||||||
Sbjct 15840 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAG 15899
Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013
|| || || || ||||| | | || || | || | || ||||| ||||||
Sbjct 15900 GCACCACGGTCGGCAGCCATCTGGA---CAACCGTGCGCTGGGAGATCTCCCATACAGTC 15956
Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073
|||| | ||| | ||| | || || | ||| || || || || ||| |
Sbjct 15957 TTGTACAAAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGAATAGA---ACCGTTC 16013
Query 118074 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 118130
| | | |||| | | |||||| | | ||||| || || || | |||||||| |
Sbjct 16014 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTC 16073
Query 118131 A----CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 118186
| | || | |||||||| ||||| || || || || | | | |||||
Sbjct 16074 AGCAACCAGGGG----TTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGAT 16129
Query 118187 ATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 118246
|||| ||||| ||||| |||||||| ||||| |||||||| || | |||||||| ||
Sbjct 16130 GTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGT 16189
Query 118247 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG 118306
|||||||| || | ||| | ||||| || | ||| | ||| | || | ||||| ||
Sbjct 16190 AGGCATGGGGGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG 16249
Query 118307 AGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATA 118364
|| |||||||| | | | || | || | | |||||| || |||| ||||||
Sbjct 16250 AGAATCCCAGTCCCAAAGATCAGAG--GGCTTGACATTCCACATGTCGTACTGAAGGATA 16307
Query 118365 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT-- 118422
|| ||||| || || ||||| | || || | |||||| ||| |||| |
Sbjct 16308 CCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGA 16367
Query 118423 -CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCC 118481
|||| | | | || || ||||| || || || ||||| || || | |
Sbjct 16368 ACGGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCA 16424
Query 118482 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 118541
|||||| || || || | | || | || |||| || ||||| |||
Sbjct 16425 CGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGG 16484
Query 118542 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGA 118598
||||| || ||||| ||||| || | ||| || || ||||| ||| |||||
Sbjct 16485 ACACCAAGACCAATGGGGCGGTGACGCATGTTGCTATTGCGAGC---CTCGGGAACGGGG 16541
Query 118599 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 118658
|| || ||| || | | | || | || || |||| |||| || |||
Sbjct 16542 TAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGA 16601
Query 118659 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 118718
||||| | | | ||| | | | | | | || | | || ||||| | ||
Sbjct 16602 AGCTTCTGGAAGTCATAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGGGCAAGGGAA 16661
Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778
|||| || || |||| | |||||| | | |||||| || || || ||||| | |
Sbjct 16662 GCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGAGG 16721
Query 118779 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 118838
|| || || ||||| |||| |||||| || || ||| ||| |||||||||
Sbjct 16722 TTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTG 16781
Query 118839 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATC 118897
|| |||||| | || | || ||||| || || | || || || || | ||| | | ||
Sbjct 16782 TAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAGCTTC 16841
Query 118898 GGCAGCTGGCACAGTG--GCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCT 118955
| || | | ||| ||| || |||| || |||||||| ||| | |||
Sbjct 16842 TGGGCCTTG-ATAGTCTTGCGACC-CTTGCCC-TCGCGTTCGTACTTCTCGTACAAGGCC 16898
Query 118956 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 119015
|| |||||||| || | || | | || || || || ||||| | ||| | |
Sbjct 16899 TCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTC 16958
Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075
|| | | || ||| || | ||||||||| || || ||||||||||| || |||
Sbjct 16959 CAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAA 17018
Query 119076 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 119135
||||| ||| || | || || | || || || ||||| |||| || || | |
Sbjct 17019 AGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAG 17078
Query 119136 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCA 119189
| ||| |||||||| || || ||||| | |||| | || | |||| |||
Sbjct 17079 ACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACC---AGGACGCTTGTTGCCA 17135
Query 119190 GCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCG 119249
|||||| || || | |||||| ||| || ||||||||||| ||||||| ||| |
Sbjct 17136 CCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTC 17195
Query 119250 GATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCA 119307
||| || || || || ||| | ||| | | | || | || | ||| || |
Sbjct 17196 GATGTACCGTTGGTGCCGGCAATGTAGGAGCC--AGTAGCACGGATACGGTGAGCGTTGA 17253
Query 119308 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 119367
|||||| || || ||| ||| ||||| ||||| | |||| || |||| || |
Sbjct 17254 GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATAC 17313
Query 119368 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGT 119426
| || || ||||| |||| | ||| ||||||||| |||| || | ||| ||
Sbjct 17314 CCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGG 17372
Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGT 119484
||||||||||||||||| || || | |||||| ||| | | |||| |||||| ||
Sbjct 17373 GTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAGGT 17430
Query 119485 CGTAGGTCTCCAAGAC 119500
||||||||| | |||
Sbjct 17431 TGTAGGTCTCGATGAC 17446
>seq1802
Length=45256
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || ||| || ||||| |||||||||||||| || || |||||| ||||||
Sbjct 29135 GGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACC 29194
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 130107
||||||||||| |||||||| | |||||| ||
Sbjct 29195 GGGCATGAGACCACGCTTCTTGAGCCAGAAGAT 29227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618414992629840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |