Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq719 188 9e-43 seq1802 91.5 2e-13 >seq719 Length=48969 Score = 188 bits (208), Expect = 9e-43 Identities = 1072/1696 (63%), Gaps = 61/1696 (4%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| ||||||||||| || |||||||| | | ||||| || Sbjct 15780 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATGCTGGTG 15839 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | || || | |||| || ||| | ||||| || ||||||||| Sbjct 15840 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAG 15899 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013 || || || || ||||| | | || || | || | || ||||| |||||| Sbjct 15900 GCACCACGGTCGGCAGCCATCTGGA---CAACCGTGCGCTGGGAGATCTCCCATACAGTC 15956 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| | ||| | ||| | || || | ||| || || || || ||| | Sbjct 15957 TTGTACAAAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGAATAGA---ACCGTTC 16013 Query 118074 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 118130 | | | |||| | | |||||| | | ||||| || || || | |||||||| | Sbjct 16014 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTC 16073 Query 118131 A----CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 118186 | | || | |||||||| ||||| || || || || | | | ||||| Sbjct 16074 AGCAACCAGGGG----TTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGAT 16129 Query 118187 ATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 118246 |||| ||||| ||||| |||||||| ||||| |||||||| || | |||||||| || Sbjct 16130 GTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGT 16189 Query 118247 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG 118306 |||||||| || | ||| | ||||| || | ||| | ||| | || | ||||| || Sbjct 16190 AGGCATGGGGGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG 16249 Query 118307 AGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATA 118364 || |||||||| | | | || | || | | |||||| || |||| |||||| Sbjct 16250 AGAATCCCAGTCCCAAAGATCAGAG--GGCTTGACATTCCACATGTCGTACTGAAGGATA 16307 Query 118365 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT-- 118422 || ||||| || || ||||| | || || | |||||| ||| |||| | Sbjct 16308 CCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGA 16367 Query 118423 -CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCC 118481 |||| | | | || || ||||| || || || ||||| || || | | Sbjct 16368 ACGGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCA 16424 Query 118482 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 118541 |||||| || || || | | || | || |||| || ||||| ||| Sbjct 16425 CGGGCCTCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGG 16484 Query 118542 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGA 118598 ||||| || ||||| ||||| || | ||| || || ||||| ||| ||||| Sbjct 16485 ACACCAAGACCAATGGGGCGGTGACGCATGTTGCTATTGCGAGC---CTCGGGAACGGGG 16541 Query 118599 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 118658 || || ||| || | | | || | || || |||| |||| || ||| Sbjct 16542 TAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGA 16601 Query 118659 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 118718 ||||| | | | ||| | | | | | | || | | || ||||| | || Sbjct 16602 AGCTTCTGGAAGTCATAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGGGCAAGGGAA 16661 Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778 |||| || || |||| | |||||| | | |||||| || || || ||||| | | Sbjct 16662 GCCAAGTTGCAGACAGCGACCTCATCGGGAGCGCAGTACTCAATGATCTCAGTGCAGAGG 16721 Query 118779 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 118838 || || || ||||| |||| |||||| || || ||| ||| ||||||||| Sbjct 16722 TTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTG 16781 Query 118839 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATC 118897 || |||||| | || | || ||||| || || | || || || || | ||| | | || Sbjct 16782 TAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAGCTTC 16841 Query 118898 GGCAGCTGGCACAGTG--GCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCT 118955 | || | | ||| ||| || |||| || |||||||| ||| | ||| Sbjct 16842 TGGGCCTTG-ATAGTCTTGCGACC-CTTGCCC-TCGCGTTCGTACTTCTCGTACAAGGCC 16898 Query 118956 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 119015 || |||||||| || | || | | || || || || ||||| | ||| | | Sbjct 16899 TCGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTC 16958 Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075 || | | || ||| || | ||||||||| || || ||||||||||| || ||| Sbjct 16959 CAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAA 17018 Query 119076 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 119135 ||||| ||| || | || || | || || || ||||| |||| || || | | Sbjct 17019 AGATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAG 17078 Query 119136 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCA 119189 | ||| |||||||| || || ||||| | |||| | || | |||| ||| Sbjct 17079 ACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACC---AGGACGCTTGTTGCCA 17135 Query 119190 GCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCG 119249 |||||| || || | |||||| ||| || ||||||||||| ||||||| ||| | Sbjct 17136 CCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTC 17195 Query 119250 GATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCA 119307 ||| || || || || ||| | ||| | | | || | || | ||| || | Sbjct 17196 GATGTACCGTTGGTGCCGGCAATGTAGGAGCC--AGTAGCACGGATACGGTGAGCGTTGA 17253 Query 119308 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 119367 |||||| || || ||| ||| ||||| ||||| | |||| || |||| || | Sbjct 17254 GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATAC 17313 Query 119368 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGT 119426 | || || ||||| |||| | ||| ||||||||| |||| || | ||| || Sbjct 17314 CCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGG 17372 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGT 119484 ||||||||||||||||| || || | |||||| ||| | | |||| |||||| || Sbjct 17373 GTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAGGT 17430 Query 119485 CGTAGGTCTCCAAGAC 119500 ||||||||| | ||| Sbjct 17431 TGTAGGTCTCGATGAC 17446 >seq1802 Length=45256 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || ||||| |||||||||||||| || || |||||| |||||| Sbjct 29135 GGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACC 29194 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 130107 ||||||||||| |||||||| | |||||| || Sbjct 29195 GGGCATGAGACCACGCTTCTTGAGCCAGAAGAT 29227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618414992629840