Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq719 219 5e-52 seq1802 93.3 5e-14 >seq719 Length=48969 Score = 219 bits (242), Expect = 5e-52 Identities = 1131/1784 (63%), Gaps = 59/1784 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||| || || || || | || |||| Sbjct 17503 CCTCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGTGTC 17444 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || |||||| |||| | | ||| ||||| | || || |||| Sbjct 17443 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCCCCACACTCT 17386 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| |||||||| || ||| |||| |||||||| ||| || ||||| | Sbjct 17385 TCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAG 17326 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| || | ||||| || | || || | | || || ||||| ||| ||||| Sbjct 17325 ACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 17266 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | || || | | | || | | || ||| || || | Sbjct 17265 GTGGCATTGGTCTCAACGCTCACCGTATCCGTGCTACTGGCTCCTACATTGCCGGCACCA 17206 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| ||| | ||| | ||||| |||||||| || || ||| ||| || ||||| | Sbjct 17205 ACGGTACATCGAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACG 17146 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| ||||| || | |||| | || |||||||| |||| Sbjct 17145 TCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAGCCCTGGC 17089 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | |||||| | || ||||| ||||| || | ||||||| || | Sbjct 17088 ACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-T 17030 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || |||||||| ||| |||||||||||| || ||||| |||||||||||||| ||| || Sbjct 17029 GCTCGCGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAG 16970 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | | | | ||| | ||| | || || | || ||||| | | || | || Sbjct 16969 AACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTGCTACGGC 16910 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTA------CGAGGAAGAAGGTCGGGCGACTGCG 104866 || ||||| || ||| | ||| ||||| ||||| | ||||| |||| Sbjct 16909 GAAGAGTTCGAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTCGCAAGACTATC 16850 Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || |||| || | ||| | || || || || |||| ||||||||||| | Sbjct 16849 AAGG-CCCAGAAGC-----TTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGCAAC 16796 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| || ||| |||| ||||| || || ||||| |||| Sbjct 16795 CCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 16736 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 ||| || ||||| ||||| || || ||| | || | | |||||| ||| Sbjct 16735 ATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTCGCT 16676 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATT 105105 || || ||| | || || | || || |||| | || || | || || | | | Sbjct 16675 GTCTGCAACTTGGCTTCCCTTGCCCTGCCCACCTTCGTTGACTACAACGATGGTGTC-TA 16617 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 ||| | | || || ||||| || || | || ||| | |||| | || Sbjct 16616 TGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACTTGAACAAGATCAT 16557 Query 105166 TGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 |||| || ||||||||| ||| ||||| || || ||| | ||||| || Sbjct 16556 TGATGTCAACCACTACCCCGTTCCCGAG---GCTCGCAATAGCAACATGCGTCACCGCCC 16500 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-G 105281 |||||||| ||||| |||||||| || |||| ||| | ||| || || ||| | Sbjct 16499 CATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCG-CATGCCTTTCG 16441 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || || || || |||| | || ||||||||||| || ||||| |||| Sbjct 16440 AGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTTGAGACCATCTACCACGCTGCTC 16381 Query 105342 T--TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 | | | |||| || |||| ||| || || | || || | ||||| || Sbjct 16380 TGACCATGTCCGTTC--AGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGGCTC 16323 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 105459 || || || || | ||||| | || |||||| | | || || || | Sbjct 16322 CCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGATCTTTG 16263 Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519 |||||||| |||| ||||| | ||||||||| | ||| | || |||||| | ||| | Sbjct 16262 GGACTGGGATTCTCTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCTCGT 16203 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 || || ||||| || |||||||| | || |||||||| || || || ||||| || || Sbjct 16202 TGCCCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGAGCC 16143 Query 105580 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 105639 |||||| | |||||||| | | | | || || || ||||| | |||||||| Sbjct 16142 CTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCCGGCGAGTTCCAGGTTGTCAACCC 16083 Query 105640 GCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCT 105696 | || | || ||| || || || || |||||| | | |||||| | | | Sbjct 16082 CTGGTTGCTGAAGGATCTCGTCGACATGGGCCTGTGGTCCGATGCCATGAAGAACCGTAT 16023 Query 105697 CAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755 ||| | || | | ||||| ||||| || || | ||||| ||| | ||| Sbjct 16022 CATCGCCGAGAAC----GGTTCTATTCAGAACATCCCCAACATTCCCGCTGAGGTCAAGG 15967 Query 105756 AGTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAG 105812 |||||| || || ||||| || | || | || |||| | ||||| || | Sbjct 15966 CTTTGTACAAGACTGTATGGGAGATCTCCCAGCGCACGGTTGTC---CAGATGGCTGCCG 15910 Query 105813 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAAC 105870 | |||||| |||||| || | |||| ||| | || || |||| | || || Sbjct 15909 ACCGTGGTGCCTTCATCGACC--AGTCCCAGTCCCTCAACATCCACATGAAGGACCCGAC 15852 Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 105930 ||| |||| || | |||||| | | | |||||| |||||||| ||||| || Sbjct 15851 AATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACGGGCAT 15792 Query 105931 GTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 105974 ||| ||||| || | ||||| | ||| |||||||||| Sbjct 15791 GTACTACCTGCGTACGCAGGCAGCTTCTGCCCCTATTCAGTTCA 15748 >seq1802 Length=45256 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 |||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||| ||| Sbjct 29221 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 29162 Query 94930 GACGAGGGACTCCACCAAGAGTTTGC 94955 || ||||| || ||| || ||||| Sbjct 29161 GATGAGGGCCTGCACACCGACTTTGC 29136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583241741953360