Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq719 219 5e-52
seq1802 93.3 5e-14
>seq719
Length=48969
Score = 219 bits (242), Expect = 5e-52
Identities = 1131/1784 (63%), Gaps = 59/1784 (3%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || || |||| || || || || | || ||||
Sbjct 17503 CCTCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGTGTC 17444
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| ||||| ||| || |||||| |||| | | ||| ||||| | || || ||||
Sbjct 17443 ATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCCCCACACTCT 17386
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| |||||||| || ||| |||| |||||||| ||| || ||||| |
Sbjct 17385 TCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAG 17326
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|||| || | ||||| || | || || | | || || ||||| ||| |||||
Sbjct 17325 ACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 17266
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519
| || ||||| | || || | | | || | | || ||| || || |
Sbjct 17265 GTGGCATTGGTCTCAACGCTCACCGTATCCGTGCTACTGGCTCCTACATTGCCGGCACCA 17206
Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579
| ||| ||| | ||| | ||||| |||||||| || || ||| ||| || ||||| |
Sbjct 17205 ACGGTACATCGAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACG 17146
Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
| | || | ||| ||||| || | |||| | || |||||||| ||||
Sbjct 17145 TCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAGCCCTGGC 17089
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|||| ||| || | |||||| | || ||||| ||||| || | ||||||| || |
Sbjct 17088 ACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-T 17030
Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752
|| |||||||| ||| |||||||||||| || ||||| |||||||||||||| ||| ||
Sbjct 17029 GCTCGCGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAG 16970
Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812
| | | | ||| | ||| | || || | || ||||| | | || | ||
Sbjct 16969 AACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTGCTACGGC 16910
Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTA------CGAGGAAGAAGGTCGGGCGACTGCG 104866
|| ||||| || ||| | ||| ||||| ||||| | ||||| ||||
Sbjct 16909 GAAGAGTTCGAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTCGCAAGACTATC 16850
Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926
| || |||| || | ||| | || || || || |||| ||||||||||| |
Sbjct 16849 AAGG-CCCAGAAGC-----TTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGCAAC 16796
Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986
|| | |||||| ||||| || ||| |||| ||||| || || ||||| ||||
Sbjct 16795 CCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 16736
Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046
||| || ||||| ||||| || || ||| | || | | |||||| |||
Sbjct 16735 ATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTCGCT 16676
Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATT 105105
|| || ||| | || || | || || |||| | || || | || || | | |
Sbjct 16675 GTCTGCAACTTGGCTTCCCTTGCCCTGCCCACCTTCGTTGACTACAACGATGGTGTC-TA 16617
Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165
||| | | || || ||||| || || | || ||| | |||| | ||
Sbjct 16616 TGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACTTGAACAAGATCAT 16557
Query 105166 TGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222
|||| || ||||||||| ||| ||||| || || ||| | ||||| ||
Sbjct 16556 TGATGTCAACCACTACCCCGTTCCCGAG---GCTCGCAATAGCAACATGCGTCACCGCCC 16500
Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-G 105281
|||||||| ||||| |||||||| || |||| ||| | ||| || || ||| |
Sbjct 16499 CATTGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCG-CATGCCTTTCG 16441
Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341
| || || || || |||| | || ||||||||||| || ||||| ||||
Sbjct 16440 AGTCTCCTGAGGCCCGTGATCTCAACAAGAAGATCTTTGAGACCATCTACCACGCTGCTC 16381
Query 105342 T--TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399
| | | |||| || |||| ||| || || | || || | ||||| ||
Sbjct 16380 TGACCATGTCCGTTC--AGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGGCTC 16323
Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 105459
|| || || || | ||||| | || |||||| | | || || || |
Sbjct 16322 CCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGATCTTTG 16263
Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519
|||||||| |||| ||||| | ||||||||| | ||| | || |||||| | ||| |
Sbjct 16262 GGACTGGGATTCTCTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCTCGT 16203
Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579
|| || ||||| || |||||||| | || |||||||| || || || ||||| || ||
Sbjct 16202 TGCCCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGAGCC 16143
Query 105580 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 105639
|||||| | |||||||| | | | | || || || ||||| | ||||||||
Sbjct 16142 CTACACCTCCAACATCTACCAGCGTCGTGTTCTTGCCGGCGAGTTCCAGGTTGTCAACCC 16083
Query 105640 GCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCT 105696
| || | || ||| || || || || |||||| | | |||||| | | |
Sbjct 16082 CTGGTTGCTGAAGGATCTCGTCGACATGGGCCTGTGGTCCGATGCCATGAAGAACCGTAT 16023
Query 105697 CAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755
||| | || | | ||||| ||||| || || | ||||| ||| | |||
Sbjct 16022 CATCGCCGAGAAC----GGTTCTATTCAGAACATCCCCAACATTCCCGCTGAGGTCAAGG 15967
Query 105756 AGTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAG 105812
|||||| || || ||||| || | || | || |||| | ||||| || |
Sbjct 15966 CTTTGTACAAGACTGTATGGGAGATCTCCCAGCGCACGGTTGTC---CAGATGGCTGCCG 15910
Query 105813 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAAC 105870
| |||||| |||||| || | |||| ||| | || || |||| | || ||
Sbjct 15909 ACCGTGGTGCCTTCATCGACC--AGTCCCAGTCCCTCAACATCCACATGAAGGACCCGAC 15852
Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 105930
||| |||| || | |||||| | | | |||||| |||||||| ||||| ||
Sbjct 15851 AATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACGGGCAT 15792
Query 105931 GTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 105974
||| ||||| || | ||||| | ||| ||||||||||
Sbjct 15791 GTACTACCTGCGTACGCAGGCAGCTTCTGCCCCTATTCAGTTCA 15748
>seq1802
Length=45256
Score = 93.3 bits (102), Expect = 5e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929
|||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||| |||
Sbjct 29221 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 29162
Query 94930 GACGAGGGACTCCACCAAGAGTTTGC 94955
|| ||||| || ||| || |||||
Sbjct 29161 GATGAGGGCCTGCACACCGACTTTGC 29136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583241741953360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |