Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq719 475 4e-129
seq1802 91.5 2e-13
>seq719
Length=48969
Score = 475 bits (526), Expect = 4e-129
Identities = 1170/1755 (67%), Gaps = 57/1755 (3%)
Strand=Plus/Plus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|| |||| ||||||||||||||||||||||| |||||| ||| | |||||| ||
Sbjct 15777 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATGCTG 15836
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| | |||| ||| |||||| || |||| ||||||||| ||||||||||||||||||
Sbjct 15837 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATG 15896
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369
| ||||| |||||||| ||||| | || |||| || | |||||||| | |||
Sbjct 15897 AAGGCACCACGGTCGGCAGCCATCTGGACAACCGTGCGCTGGGAGATCTCCCATACAGTC 15956
Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGC--TCCCACCGG-CT 78426
||| | ||||| | ||| | | |||| | | ||| | | |||| ||
Sbjct 15957 TTGTACAAAGCCTTGACCTCAGCGGGAATGTT--GGGGATGTTCTGAATAGAACCGTTCT 16014
Query 78427 CGCACA--ATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCC--CG 78482
|| | || ||||| || | | ||| | || | |||||| |
Sbjct 16015 CGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCA 16074
Query 78483 G--ACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATG 78540
| |||||| |||| | | |||||||||||| || || ||| ||||||||
Sbjct 16075 GCAACCAGG----GGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATG 16130
Query 78541 TTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTC 78600
|||| ||||| |||||||| ||||||||| |||| |||||| | || ||||| ||
Sbjct 16131 TTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTA 16190
Query 78601 GGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG- 78659
|||||||| || || || | | || || | ||| ||| |||||||| |||| ||
Sbjct 16191 GGCATGGGGGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGA 16250
Query 78660 -----GCCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCC 78714
| |||||||| ||| | | || ||||||||| ||||||||||||
Sbjct 16251 GAATCCCAGTCCCAAAGATCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCC 16310
Query 78715 TCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT 78774
| ||| || || |||| | |||| ||| | |||||||||||||| || |
Sbjct 16311 TGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACG 16370
Query 78775 GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCC 78834
||| | ||| || |||||||| | | ||| ||||| ||||||||| || || |||
Sbjct 16371 GACATGGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACGGGCC 16430
Query 78835 TTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCG 78894
| | ||||| | | || || | ||| |||| || || |||||||| ||
Sbjct 16431 TCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCA 16490
Query 78895 ATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGG---TCGGGTAAAAG 78951
| | | || || ||||| ||||||||||| || || ||||||| ||||| |
Sbjct 16491 AGACCAATGGGGCGGTGACGCATGTTGCTATTGCG---AGCCTCGGGAACGGGGTAGTGG 16547
Query 78952 TTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTG 79011
|| ||| |||| ||||| ||| || |||||| |||| ||||||| | ||
Sbjct 16548 TTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTC 16607
Query 79012 GCGAAATCAAA------ATGATTTCCTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGG 79065
||| ||| | || || | | ||| || || ||| || || |||| |
Sbjct 16608 TGGAAGTCATAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGGGCAAGGGAAGCCAAG 16667
Query 79066 TTGCACACGGCCGTCTCGTCCGG-GC-TAGAAACCTCGATGATTTCTGTGCACAAATTAG 79123
||||| || || ||| || || || || | ||| ||||| || ||||| | || |
Sbjct 16668 TTGCAGACAGCGACCTCATCGGGAGCGCAGTA--CTCAATGATCTCAGTGCAGAGGTTGG 16725
Query 79124 ACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGC 79183
| |||||| || | |||||||||||||||||| ||| ||| |||||||||
Sbjct 16726 AGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGA 16785
Query 79184 ACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGG 79243
|||| | || | || ||||| |||| || || | | | | ||| | | | |||
Sbjct 16786 GCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAGCTTCTGGG 16845
Query 79244 CCCGGACAACCTTCTTGTACCGACCCT-----GTGCG-ACGTACGTCCGGTACAACTCGT 79297
|| || | ||||| ||||||| ||| ||||| || |||||| | |
Sbjct 16846 CCTTGATA---GTCTTG---CGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCT 16899
Query 79298 TGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCC 79357
||| | || || ||| || | || ||| |||||||| | |||||||| ||| ||
Sbjct 16900 CGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCC 16959
Query 79358 AGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGA 79417
|||| ||| |||||| || ||| |||||| || || |||||||| || || ||| |
Sbjct 16960 AGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAA 17019
Query 79418 GGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGA 79477
| ||||| ||| | |||||| | ||| |||||| |||| || | || || | ||
Sbjct 17020 GATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGA 17079
Query 79478 TGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCT 79537
||||||||||| ||||| || || |||||||| | ||| |||||| ||| ||||
Sbjct 17080 CATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCT 17139
Query 79538 GGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGA 79597
||| |||||| || || ||||||||||| || || |||||||| | || |||| |||
Sbjct 17140 GGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGT--TCGA 17197
Query 79598 CG--CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAAT--GTTCGAGCAGTGGATT 79653
| ||||| || ||| || | || | || || || | | |||| || ||
Sbjct 17198 TGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGT-GAGC-GTTGAGA 17255
Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713
|| ||||| || | | ||||||||| ||||| |||||| || ||||| || |||
Sbjct 17256 CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCC 17315
Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773
|| || ||||| |||||||| |||| |||||||| |||| ||| | |||
Sbjct 17316 TCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTA 17375
Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833
|| ||||||||||| || || | ||||| ||||||||||| | ||| || | |||
Sbjct 17376 CCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAG 17435
Query 79834 GTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGG 79893
||||| |||| ||| || || || || ||||||||| || || ||||||| | |
Sbjct 17436 GTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCATGATCATG 17495
Query 79894 TACTGGGGCGTCTCG 79908
| ||| || |||||
Sbjct 17496 TGCTGAGGTCTCTCG 17510
Score = 423 bits (468), Expect = 2e-113
Identities = 1160/1761 (66%), Gaps = 71/1761 (4%)
Strand=Plus/Minus
Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156
|||| |||||| || | ||||||| || || ||||||||| || || || || |
Sbjct 17509 GAGAGACCTCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAG 17450
Query 19157 CGAGTCCGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGAC 19215
|| ||| |||||| ||| |||| ||| |||| ||||||||||| ||||| | || ||
Sbjct 17449 CGTGTCATCGAGACCTACAACCTCATGT-CCAGCAAGTTCTTCACCCACGCCTCCCCCAC 17391
Query 19216 CCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAA 19275
|| |||||||| ||||| | ||| |||| || ||||| || | |||||
Sbjct 17390 ACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAA 17331
Query 19276 GGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTG 19335
||| ||| |||||||| || ||||| || |||||| ||||| |||||||||
Sbjct 17330 GGAAGACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGAT 17271
Query 19336 GTCCGGGGGTATCGGGATCCACTGCTCGAA-TATCCGGTCGAGTGGTACACGAATCAATG 19394
| | || || || || || || |||| |||||| | | ||| | || |
Sbjct 17270 GGCTGGTGGCATTGGTCTCAAC-GCTCACCGTATCCGTGCTACTGGCTCCTACATTGCCG 17212
Query 19395 GGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCA 19454
| || ||||| | | ||||| || | || ||||| || |||||||||||||| ||
Sbjct 17211 GCACCAACGGTACATCGAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTC 17152
Query 19455 GGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCAT 19514
| |||||| ||||||| ||| ||| || || | |||||||| ||||| ||||| |
Sbjct 17151 GCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAGCCCT 17092
Query 19515 GGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGC 19574
||||||| || ||| | || ||| | || ||||| |||||| || | |||||| | |
Sbjct 17091 GGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCC 17032
Query 19575 GCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGA 19634
| |||||| || ||| || | ||||| || || || |||||| ||| || ||||
Sbjct 17031 GTGCTCGCGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGA 16972
Query 19635 AGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694
|| ||| || ||| ||| |||||||| | || ||||||||| | | ||| |||||
Sbjct 16971 AGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTGCTACG 16912
Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGC-CGGTTCAAGAAGGTG 19753
|||| | |||| | | |||||| || |||| | | ||||| || || |||
Sbjct 16911 GCGAAGAGTTCGAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTC-GCAAGACT 16853
Query 19754 GTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCG 19813
|| ||||| | | | ||| | | |||| | ||| |||||| |||| ||
Sbjct 16852 ATCAAGGCCCAGAAGCTTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGCAACCCC 16793
Query 19814 TACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC 19873
| |||| ||||||||| ||||| ||| |||| || ||||||||| | || | |||
Sbjct 16792 TTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATC 16733
Query 19874 AAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTG 19933
|||||||| || ||||| ||||| ||| | | || || ||| || ||
Sbjct 16732 CGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTCGCTGTC 16673
Query 19934 TGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGAC 19987
|| || |||| ||||| |||||| || ||||| ||| | || |||
Sbjct 16672 TGCAACTTGGCTTCCCTTGCCCTGCCCACCTTCGTTGACTACAACGATGGTGTCTATGAC 16613
Query 19988 TTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGAT 20047
|| || | ||||||| || | |||||| || || |||| |||| |||
Sbjct 16612 TTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACTTGAACAAGATCATTGAT 16553
Query 20048 CGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATC 20104
||| ||||| |||| ||| ||||| || ||||| ||||| || ||
Sbjct 16552 GTCAACCACTACCCCGTTCCCGA---GGCTCGCAATAGCAACATGCGTCACCGCCCCATT 16496
Query 20105 GCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGAT 20164
| | || |||||||| || || || | |||| | || || | | ||||| |
Sbjct 16495 GGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCGCATGCCTTTCGAGTCT 16436
Query 20165 CCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT--CC 20222
|| |||| || || ||||||||| ||||| ||| || | |||||||| || || ||
Sbjct 16435 CCTGAGGCCCGTGATCTCAACAAGAAGATCTTTGAGACCATCTACCACGCTGCTCTGACC 16376
Query 20223 TGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG 20282
| ||| | | || ||||| ||||| ||| | ||| |||| | |||| || ||
Sbjct 16375 ATG-TCCGTTC-AGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGGCTCCCCTA 16318
Query 20283 CGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA------CTGAGAATGAGTTTT 20336
||| |||||||||| ||| ||||||||| |||| |||| | | |
Sbjct 16317 TCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGATCTTTGGGACT 16258
Query 20337 GGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGC 20396
|| | || |||| |||||||| ||||| | |||||| |||||||| || |
Sbjct 16257 GGGATTCTCTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCTCGTTGCCC 16198
Query 20397 CCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACA 20456
||||||| || ||||| || | |||||| |||| ||||||||| |||||||| ||||
Sbjct 16197 CCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGAGCCCTACA 16138
Query 20457 CGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACC 20516
| ||||||||||| ||||||| || ||||| |||||| || ||| ||| | ||
Sbjct 16137 CCTCCAACATCTACCAGCGTCGTGTTCTTGCCGGCGAGTTC--CA-GGTTGTCAA-CCCC 16082
Query 20517 TGGTCCGCGACTTGCAGAAG------ATCGATATGTG---GTCGCCCAA---AATTAAGA 20564
||| |||| |||| |||| ||| | || | || | || ||||
Sbjct 16081 TGG--------TTGCTGAAGGATCTCGTCGACATGGGCCTGTGGTCCGATGCCATGAAGA 16030
Query 20565 ATGAAATTGTCCGAGCCGGCGGGAGCG--TCCAGGCATTGGATATCCCCCAGA------- 20615
| || | || || || || || | || | | |||||| | |
Sbjct 16029 ACCGTATCAT------CGCCGAGAACGGTTCTATTCA--GAACATCCCCAACATTCCCGC 15978
Query 20616 --ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACAT 20673
| |||||| | |||| ||| |||||||| ||| | ||| | | || | ||
Sbjct 15977 TGAGGTCAAGGCTTTGTACAAGACTGTATGGGAGATCTCCCAGCGCACGGTTGTCCAGAT 15918
Query 20674 GGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAA 20733
||| ||||| || || |||| |||||||||||||||||| ||||| || |||| || |
Sbjct 15917 GGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTCAACATCCACATGAAGGA 15858
Query 20734 TCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGAC 20793
|||| ||| ||| | | | |||||| | ||||||| | || ||||||||
Sbjct 15857 CCCGACAATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGAC 15798
Query 20794 GGGCATGTACTATCTGCGGAC 20814
|||||||||||| ||||| ||
Sbjct 15797 GGGCATGTACTACCTGCGTAC 15777
>seq1802
Length=45256
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098
|| ||||||||||| |||||||| |||||||| || |||| |||||||||||||| ||
Sbjct 29227 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATC 29168
Query 60099 TCCCGGGACGAGGGCCTCCA 60118
||||| || |||||||| ||
Sbjct 29167 TCCCGTGATGAGGGCCTGCA 29148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548506876952160
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