Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq719 475 4e-129 seq1802 91.5 2e-13 >seq719 Length=48969 Score = 475 bits (526), Expect = 4e-129 Identities = 1170/1755 (67%), Gaps = 57/1755 (3%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| ||||||||||||||||||||||| |||||| ||| | |||||| || Sbjct 15777 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATGCTG 15836 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| |||||| || |||| ||||||||| |||||||||||||||||| Sbjct 15837 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATG 15896 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 | ||||| |||||||| ||||| | || |||| || | |||||||| | ||| Sbjct 15897 AAGGCACCACGGTCGGCAGCCATCTGGACAACCGTGCGCTGGGAGATCTCCCATACAGTC 15956 Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGC--TCCCACCGG-CT 78426 ||| | ||||| | ||| | | |||| | | ||| | | |||| || Sbjct 15957 TTGTACAAAGCCTTGACCTCAGCGGGAATGTT--GGGGATGTTCTGAATAGAACCGTTCT 16014 Query 78427 CGCACA--ATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCC--CG 78482 || | || ||||| || | | ||| | || | |||||| | Sbjct 16015 CGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCA 16074 Query 78483 G--ACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATG 78540 | |||||| |||| | | |||||||||||| || || ||| |||||||| Sbjct 16075 GCAACCAGG----GGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGCTGGTAGATG 16130 Query 78541 TTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTC 78600 |||| ||||| |||||||| ||||||||| |||| |||||| | || ||||| || Sbjct 16131 TTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTA 16190 Query 78601 GGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG- 78659 |||||||| || || || | | || || | ||| ||| |||||||| |||| || Sbjct 16191 GGCATGGGGGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGA 16250 Query 78660 -----GCCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCC 78714 | |||||||| ||| | | || ||||||||| |||||||||||| Sbjct 16251 GAATCCCAGTCCCAAAGATCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCC 16310 Query 78715 TCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT 78774 | ||| || || |||| | |||| ||| | |||||||||||||| || | Sbjct 16311 TGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACG 16370 Query 78775 GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCC 78834 ||| | ||| || |||||||| | | ||| ||||| ||||||||| || || ||| Sbjct 16371 GACATGGTCAGAGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTGAGATCACGGGCC 16430 Query 78835 TTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCG 78894 | | ||||| | | || || | ||| |||| || || |||||||| || Sbjct 16431 TCAGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCA 16490 Query 78895 ATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGG---TCGGGTAAAAG 78951 | | | || || ||||| ||||||||||| || || ||||||| ||||| | Sbjct 16491 AGACCAATGGGGCGGTGACGCATGTTGCTATTGCG---AGCCTCGGGAACGGGGTAGTGG 16547 Query 78952 TTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTG 79011 || ||| |||| ||||| ||| || |||||| |||| ||||||| | || Sbjct 16548 TTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTC 16607 Query 79012 GCGAAATCAAA------ATGATTTCCTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGG 79065 ||| ||| | || || | | ||| || || ||| || || |||| | Sbjct 16608 TGGAAGTCATAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGGGCAAGGGAAGCCAAG 16667 Query 79066 TTGCACACGGCCGTCTCGTCCGG-GC-TAGAAACCTCGATGATTTCTGTGCACAAATTAG 79123 ||||| || || ||| || || || || | ||| ||||| || ||||| | || | Sbjct 16668 TTGCAGACAGCGACCTCATCGGGAGCGCAGTA--CTCAATGATCTCAGTGCAGAGGTTGG 16725 Query 79124 ACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGC 79183 | |||||| || | |||||||||||||||||| ||| ||| ||||||||| Sbjct 16726 AGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGA 16785 Query 79184 ACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGG 79243 |||| | || | || ||||| |||| || || | | | | ||| | | | ||| Sbjct 16786 GCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCAAAGCTTCTGGG 16845 Query 79244 CCCGGACAACCTTCTTGTACCGACCCT-----GTGCG-ACGTACGTCCGGTACAACTCGT 79297 || || | ||||| ||||||| ||| ||||| || |||||| | | Sbjct 16846 CCTTGATA---GTCTTG---CGACCCTTGCCCTCGCGTTCGTACTTCTCGTACAAGGCCT 16899 Query 79298 TGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCC 79357 ||| | || || ||| || | || ||| |||||||| | |||||||| ||| || Sbjct 16900 CGAACTCTTCGCCGTAGCAGTCAGCCAAGCCAGGGCACTCATTGGGGCACATGAGGGTCC 16959 Query 79358 AGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGA 79417 |||| ||| |||||| || ||| |||||| || || |||||||| || || ||| | Sbjct 16960 AGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAA 17019 Query 79418 GGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGA 79477 | ||||| ||| | |||||| | ||| |||||| |||| || | || || | || Sbjct 17020 GATCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCGAAGA 17079 Query 79478 TGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCT 79537 ||||||||||| ||||| || || |||||||| | ||| |||||| ||| |||| Sbjct 17080 CATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTGTTGCCACCCT 17139 Query 79538 GGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGA 79597 ||| |||||| || || ||||||||||| || || |||||||| | || |||| ||| Sbjct 17140 GGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGT--TCGA 17197 Query 79598 CG--CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAAT--GTTCGAGCAGTGGATT 79653 | ||||| || ||| || | || | || || || | | |||| || || Sbjct 17198 TGTACCGTTGGTGCCGGCAATGTAGGAGCCAGTAGCACGGATACGGT-GAGC-GTTGAGA 17255 Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 || ||||| || | | ||||||||| ||||| |||||| || ||||| || ||| Sbjct 17256 CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAAATACCC 17315 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773 || || ||||| |||||||| |||| |||||||| |||| ||| | ||| Sbjct 17316 TCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTA 17375 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833 || ||||||||||| || || | ||||| ||||||||||| | ||| || | ||| Sbjct 17376 CCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAG 17435 Query 79834 GTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGG 79893 ||||| |||| ||| || || || || ||||||||| || || ||||||| | | Sbjct 17436 GTCTCGATGACACGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCATGATCATG 17495 Query 79894 TACTGGGGCGTCTCG 79908 | ||| || ||||| Sbjct 17496 TGCTGAGGTCTCTCG 17510 Score = 423 bits (468), Expect = 2e-113 Identities = 1160/1761 (66%), Gaps = 71/1761 (4%) Strand=Plus/Minus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156 |||| |||||| || | ||||||| || || ||||||||| || || || || | Sbjct 17509 GAGAGACCTCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTCGAG 17450 Query 19157 CGAGTCCGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGAC 19215 || ||| |||||| ||| |||| ||| |||| ||||||||||| ||||| | || || Sbjct 17449 CGTGTCATCGAGACCTACAACCTCATGT-CCAGCAAGTTCTTCACCCACGCCTCCCCCAC 17391 Query 19216 CCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAA 19275 || |||||||| ||||| | ||| |||| || ||||| || | ||||| Sbjct 17390 ACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAA 17331 Query 19276 GGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTG 19335 ||| ||| |||||||| || ||||| || |||||| ||||| ||||||||| Sbjct 17330 GGAAGACTCTATTGAGGGTATTTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGAT 17271 Query 19336 GTCCGGGGGTATCGGGATCCACTGCTCGAA-TATCCGGTCGAGTGGTACACGAATCAATG 19394 | | || || || || || || |||| |||||| | | ||| | || | Sbjct 17270 GGCTGGTGGCATTGGTCTCAAC-GCTCACCGTATCCGTGCTACTGGCTCCTACATTGCCG 17212 Query 19395 GGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCA 19454 | || ||||| | | ||||| || | || ||||| || |||||||||||||| || Sbjct 17211 GCACCAACGGTACATCGAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTC 17152 Query 19455 GGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCAT 19514 | |||||| ||||||| ||| ||| || || | |||||||| ||||| ||||| | Sbjct 17151 GCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAGCCCT 17092 Query 19515 GGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGC 19574 ||||||| || ||| | || ||| | || ||||| |||||| || | |||||| | | Sbjct 17091 GGCACGCCGATGTCTTCGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCC 17032 Query 19575 GCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGA 19634 | |||||| || ||| || | ||||| || || || |||||| ||| || |||| Sbjct 17031 GTGCTCGCGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGA 16972 Query 19635 AGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694 || ||| || ||| ||| |||||||| | || ||||||||| | | ||| ||||| Sbjct 16971 AGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCTTGGCTGACTGCTACG 16912 Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGC-CGGTTCAAGAAGGTG 19753 |||| | |||| | | |||||| || |||| | | ||||| || || ||| Sbjct 16911 GCGAAGAGTTCGAGGCCTTGTACGAGAAGTACGAACGCGAGGGCAAGGGTC-GCAAGACT 16853 Query 19754 GTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCG 19813 || ||||| | | | ||| | | |||| | ||| |||||| |||| || Sbjct 16852 ATCAAGGCCCAGAAGCTTTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGCAACCCC 16793 Query 19814 TACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC 19873 | |||| ||||||||| ||||| ||| |||| || ||||||||| | || | ||| Sbjct 16792 TTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTGGGAACCATC 16733 Query 19874 AAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTG 19933 |||||||| || ||||| ||||| ||| | | || || ||| || || Sbjct 16732 CGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCTCCCGATGAGGTCGCTGTC 16673 Query 19934 TGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGAC 19987 || || |||| ||||| |||||| || ||||| ||| | || ||| Sbjct 16672 TGCAACTTGGCTTCCCTTGCCCTGCCCACCTTCGTTGACTACAACGATGGTGTCTATGAC 16613 Query 19988 TTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGAT 20047 || || | ||||||| || | |||||| || || |||| |||| ||| Sbjct 16612 TTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACTTGAACAAGATCATTGAT 16553 Query 20048 CGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATC 20104 ||| ||||| |||| ||| ||||| || ||||| ||||| || || Sbjct 16552 GTCAACCACTACCCCGTTCCCGA---GGCTCGCAATAGCAACATGCGTCACCGCCCCATT 16496 Query 20105 GCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGAT 20164 | | || |||||||| || || || | |||| | || || | | ||||| | Sbjct 16495 GGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCGCATGCCTTTCGAGTCT 16436 Query 20165 CCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT--CC 20222 || |||| || || ||||||||| ||||| ||| || | |||||||| || || || Sbjct 16435 CCTGAGGCCCGTGATCTCAACAAGAAGATCTTTGAGACCATCTACCACGCTGCTCTGACC 16376 Query 20223 TGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG 20282 | ||| | | || ||||| ||||| ||| | ||| |||| | |||| || || Sbjct 16375 ATG-TCCGTTC-AGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGGCTCCCCTA 16318 Query 20283 CGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA------CTGAGAATGAGTTTT 20336 ||| |||||||||| ||| ||||||||| |||| |||| | | | Sbjct 16317 TCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGATCTTTGGGACT 16258 Query 20337 GGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGC 20396 || | || |||| |||||||| ||||| | |||||| |||||||| || | Sbjct 16257 GGGATTCTCTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCTCGTTGCCC 16198 Query 20397 CCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACA 20456 ||||||| || ||||| || | |||||| |||| ||||||||| |||||||| |||| Sbjct 16197 CCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGAGCCCTACA 16138 Query 20457 CGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACC 20516 | ||||||||||| ||||||| || ||||| |||||| || ||| ||| | || Sbjct 16137 CCTCCAACATCTACCAGCGTCGTGTTCTTGCCGGCGAGTTC--CA-GGTTGTCAA-CCCC 16082 Query 20517 TGGTCCGCGACTTGCAGAAG------ATCGATATGTG---GTCGCCCAA---AATTAAGA 20564 ||| |||| |||| |||| ||| | || | || | || |||| Sbjct 16081 TGG--------TTGCTGAAGGATCTCGTCGACATGGGCCTGTGGTCCGATGCCATGAAGA 16030 Query 20565 ATGAAATTGTCCGAGCCGGCGGGAGCG--TCCAGGCATTGGATATCCCCCAGA------- 20615 | || | || || || || || | || | | |||||| | | Sbjct 16029 ACCGTATCAT------CGCCGAGAACGGTTCTATTCA--GAACATCCCCAACATTCCCGC 15978 Query 20616 --ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACAT 20673 | |||||| | |||| ||| |||||||| ||| | ||| | | || | || Sbjct 15977 TGAGGTCAAGGCTTTGTACAAGACTGTATGGGAGATCTCCCAGCGCACGGTTGTCCAGAT 15918 Query 20674 GGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAA 20733 ||| ||||| || || |||| |||||||||||||||||| ||||| || |||| || | Sbjct 15917 GGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTCAACATCCACATGAAGGA 15858 Query 20734 TCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGAC 20793 |||| ||| ||| | | | |||||| | ||||||| | || |||||||| Sbjct 15857 CCCGACAATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGAC 15798 Query 20794 GGGCATGTACTATCTGCGGAC 20814 |||||||||||| ||||| || Sbjct 15797 GGGCATGTACTACCTGCGTAC 15777 >seq1802 Length=45256 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || ||||||||||| |||||||| |||||||| || |||| |||||||||||||| || Sbjct 29227 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATC 29168 Query 60099 TCCCGGGACGAGGGCCTCCA 60118 ||||| || |||||||| || Sbjct 29167 TCCCGTGATGAGGGCCTGCA 29148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548506876952160